Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02031 ATGGCTGTGGAGAATGGCCTTGATGGTGAAGGAAATAAACACTATGAGGCAACCACATCAGAGAATCATTCAGAAGAAAAGGTAGAAAAGAGCGGACAAAAAGAAAAGCCGGAGACAGTTCCCTTTCACAAACTGTTCTCTTTTGCAGATTCCACTGACATTCTGTTGATGACTGTTGGGAGCATTGGTGCCATTGGAAATGGTATGGGTATGCCTCTGATGTCATTACTGTTTGGTCAAATGATTGATAGCTTTGGCAGTAACCAGCAAAGCACCAATGTAGTGGAACTAGTATCTGAGGTATCTCTGAAATTTGTATACTTGGCAATAGGAAGTGGGGTGGCAGCATTCCTCCGGGAAAGACAGGCTGCACGAATAAGGGGATTGTATTTGAAAACTATACTAAGACAAGATGTTGCTTTCTTTGATAAAGAAACAAACACTGGAGAGGTGGTAGAGAGAATGTCAGGTGACACTGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAAATTTCTGCAGCTAATTGCAACATTTATTGGAGGCTATGTCATAGCCTTTCTCAAAGGGTGGCTTCTTACAGTTGTCATGTTGTCCACTCTTCCACTTCTTGTTGCTTCAGGTGCTGCAATAGCCATCATCATAAGCAGGGCGGCTTCCCAAGGTCAAACTGCTTATGCAAAAGCTGCAAATGTAGTTGAACAGACAATTGGCTCAATAAGAACAGTTGCATCCTTTACTGGGGAAAAGCAAGCAATATCTAGTTATAGCAAATTTCTTATAGATGCTTACAAATCAGGAGTTCATGAAGGTTTCACATCTGGGGTAGGTGTAGGCACAATTATGTTCGTTGTTTACTGTGGTTATGCTTTGGCTATATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATATAATGGGGGCACGGTGATTAATGTGATTATTGCTGTGTTAACTGCTTCCACGTCTCTTGGCCAGGCATCCCCTAGCATGAGTGCTTTTGCTGCGGGTCAGGCTGCAGCTTACAAAATGTTTCAGACAATTGAGAGGAAGCCAGAGATAGATGCTTATGATCCAAATGGAAAAATATTAGAGGATATTCAAGGTGAAATAGAGCTAAGGGAAGTTTATTTCAGTTATCCAGCCCGACCTGAGGAACTGATATTCAATGGATTCTGTCTTCACATACCTAGCGGCACAACTGCTGCATTAGTTGGACAAAGTGGAAGTGGAAAGTCTACTGTTATCAGTTTGGTAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGAATTAACTTGAAAGAATTTCAGCTTAGGTCGATCAGAGGAAAAATTGGCCTAGTCAGTCAGGAGCCAGTGCTGTTTGCATCTAGCATCAAGGATAACATTGCATATGGAAAGGAGGGAGCAACGATTGAAGAGATAAGATCTGCATCTGAACTTGCAAATGCTGCTAAATTCATTGATAAACTGCCACAGGGATTGGACACAATGGTTGGTGAGCATGGAATTCAGTTGTCTGGTGGACAGAAGCAGCGAATTGCCATTGCAAGAGCAATCTTGAAAGATCCAAAAATTCTACTCCTGGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAATGGATAGTGCAAGAGGCTCTCGAAAGGATCATGGTCAACAGAACTACAGTTGTTGTGGCACATCGCTTGAGCACAGTGAGGAATGCTGATATGATTGCCGTAATTCACAGAGGGAAGATGGTTGAGAAAGGAACCCACTCAGAGTTACTCGAGGATACTGAGGGAGCTTACTATCAACTGATACACCTGCAAGAAATAAACAAGGAATCAGAAGAAACTGCAGATCATGACAACAAGAGTGAACTTTCCATAGAATCCTTTAGACAGTCGAGTCAAAGGAGGTTACTTCAAAGATCTATTAGTAAGGGATCATCTGTAGGGAATAGTAGCCGCCATTCATTTTCAGTTTCGTTTGGTTTGCCAACAGGAGTTAACGTCCCTGATCCTGAACGTGCAAACTTACAACCCAAAGAACAAGCACAAGAAGTTCCACTGAGCCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTTCTTCTGATTGGATGTTTAGCTGCCATAGGAAGTGGAATTACACTTCCACTATCTAGCATTTTGATTTCCAGTGTCATCAAAACATTTTATGAACCATTTGATGAGATGAAAAAGGACTCCAAGTTTTGGGCACTAATGTATATGGTCCTTGGTCTTGCTACATTACTGGTGAATCCAACCCGAACATATTTTTTCTCGGTGGCTGGATGTAAGTTAATCCAACGTATCAGGCTAATATGTTTTGAGAAGGTGGTAAACATGGAGGTTGGTTGGTTTGATGAGGCTGATAACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGTTGCTTATGTGCGTGCCCTTGTGGGAGATGCGCTGGGACTACTAGTTAAAAATTTAGCATCTGCATTGGCAGGTTTGATTATTGCTTTCGTTGCAAGCTGGCAGCTGGCATTGATTATACTGGTCTTGATCGCCCTGATTGGAGTGAATGGATATGTTCAAATGAAATTCATGAAGGGATTCAGCGCAGATGCAAAGATGATGTACGAGGAAGCTAGCCAAGTTGCTAATGATGCAGTCGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCTGAAGAAAAGGTTATGGAACTCTACAGGAAGAAATGTGAAGGCCCCATGAAAACAGGGATAAGGCAAGGGTTGATCAGTGGATCAGGATTTGGGATTTCATTTTTCTTCTTGTTTAGTGTCTACGCAACCAGTTTCTACGCAGGAGCTAGACTTGTGGATGCTGGGAAGGCATCATTCTCAGATGTTTTCCGGGTTTTCTTTGCGTTGACTATGGCAGCTATTGGAGTTTCCCAATCAAGCTCCTTTGCTCCTGACTCTAGCAAAGCCAAGTCAGCCACTGCTTCTATATTTGGAATAATTGATAAGAAGTCAAAGATAGATCCGAGTGATGAGTCTGGTACCATGCTGGATAGCGTTAAGGGGGAAATTGAGCTTCGTCATGTGAGCTTCAAGTATGCATCTAGGCCTGATATACAAATTTTTCGGGACCTCAGCTTAGCCATCCATTCTGGCAAGACGGTGGCTCTTGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTGCCTTGTTACAGAGATTTTATGATCCTGATTCAGGTGAAATCACGCTTGATGGGGTAGAAATTCGGGAGTTACAACTCAAGTGGTTAAGGCAGCAGATGGGCCTTGTAAGCCAAGAGCCAGTATTATTCAATGACACTATCCGTGCCAATATTGCCTATGGAAAGGGAGGCGATGCAACTGAAGCAGAAATCATAGCTGCAGCAGAACTAGCCAATGCACATAACTTCATTAGCGGCTTACAACAGGGTTATGATACTACAGTGGGAGAGAGGGGAACCCAATTATCTGGAGGGCAGAAGCAAAGGGTAGCCATTGCACGTGCTATGATAAAAAGTCCGAAGATATTGCTACTAGATGAGGCCACAAGTGCATTGGATGCAGAATCAGAGAGAGTTGTTCAAGATGCATTAGACAAAGTCATGGTGAACAGGACCACTGTGGTTGTGGCACATCGTCTATCTACAATAAAAAATGCAGATGTGATTGCTGTTGTCAAGAATGGAGTTATAGTGGAAAAAGGACGGCATGAAACACTCATTAACGCTAAGGGTGGATTTTATGCTTCCTTAGTCCAACTCCACACAAGTGCTTCAACAGTATGA 3819 0.4294 MAVENGLDGEGNKHYEATTSENHSEEKVEKSGQKEKPETVPFHKLFSFADSTDILLMTVGSIGAIGNGMGMPLMSLLFGQMIDSFGSNQQSTNVVELVSEVSLKFVYLAIGSGVAAFLRERQAARIRGLYLKTILRQDVAFFDKETNTGEVVERMSGDTVLIQDAMGEKVGKFLQLIATFIGGYVIAFLKGWLLTVVMLSTLPLLVASGAAIAIIISRAASQGQTAYAKAANVVEQTIGSIRTVASFTGEKQAISSYSKFLIDAYKSGVHEGFTSGVGVGTIMFVVYCGYALAIWFGAKMIMEKGYNGGTVINVIIAVLTASTSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKILEDIQGEIELREVYFSYPARPEELIFNGFCLHIPSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRSIRGKIGLVSQEPVLFASSIKDNIAYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGIQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESEWIVQEALERIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLEDTEGAYYQLIHLQEINKESEETADHDNKSELSIESFRQSSQRRLLQRSISKGSSVGNSSRHSFSVSFGLPTGVNVPDPERANLQPKEQAQEVPLSRLASLNKPEIPVLLIGCLAAIGSGITLPLSSILISSVIKTFYEPFDEMKKDSKFWALMYMVLGLATLLVNPTRTYFFSVAGCKLIQRIRLICFEKVVNMEVGWFDEADNSSGAIGARLSADVAYVRALVGDALGLLVKNLASALAGLIIAFVASWQLALIILVLIALIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKTGIRQGLISGSGFGISFFFLFSVYATSFYAGARLVDAGKASFSDVFRVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGIIDKKSKIDPSDESGTMLDSVKGEIELRHVSFKYASRPDIQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIRELQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHNFISGLQQGYDTTVGERGTQLSGGQKQRVAIARAMIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINAKGGFYASLVQLHTSASTV* 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02031 1272 FunFam ABC transporter B family member 1 685 993 - -
Rops6g02031 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 372 608 IPR003439 GO:0005524
Rops6g02031 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 610 IPR027417 -
Rops6g02031 1272 FunFam ABC transporter B family member 1 1017 1267 - -
Rops6g02031 1272 SMART AAA_5 399 585 IPR003593 GO:0016887
Rops6g02031 1272 SMART AAA_5 1054 1247 IPR003593 GO:0016887
Rops6g02031 1272 Pfam ABC transporter 1046 1195 IPR003439 GO:0005524
Rops6g02031 1272 Pfam ABC transporter transmembrane region 60 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02031 1272 Pfam ABC transporter transmembrane region 705 977 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02031 1272 CDD ABC_6TM_Pgp_ABCB1_D1_like 57 333 - -
Rops6g02031 1272 FunFam ABC transporter B family member 9 994 1016 - -
Rops6g02031 1272 CDD ABC_MTABC3_MDL1_MDL2 1027 1265 - -
Rops6g02031 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 59 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02031 1272 FunFam ABC transporter B family member 1 362 611 - -
Rops6g02031 1272 SUPERFAMILY ABC transporter transmembrane region 38 356 IPR036640 GO:0005524|GO:0016020
Rops6g02031 1272 MobiDBLite consensus disorder prediction 9 36 - -
Rops6g02031 1272 ProSitePatterns ABC transporters family signature. 1167 1181 IPR017871 GO:0005524|GO:0016887
Rops6g02031 1272 Gene3D ABC transporter type 1, transmembrane domain 994 1269 IPR036640 GO:0005524|GO:0016020
Rops6g02031 1272 CDD ABC_MTABC3_MDL1_MDL2 372 610 - -
Rops6g02031 1272 Gene3D ABC transporter type 1, transmembrane domain 685 993 IPR036640 GO:0005524|GO:0016020
Rops6g02031 1272 SUPERFAMILY ABC transporter transmembrane region 693 1011 IPR036640 GO:0005524|GO:0016020
Rops6g02031 1272 FunFam ABC transporter B family member 9 44 368 - -
Rops6g02031 1272 Gene3D - 1017 1267 IPR027417 -
Rops6g02031 1272 Gene3D - 362 611 IPR027417 -
Rops6g02031 1272 Pfam ABC transporter 395 539 IPR003439 GO:0005524
Rops6g02031 1272 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524|GO:0016887
Rops6g02031 1272 PANTHER ABC TRANSPORTER B FAMILY 19 613 IPR039421 -
Rops6g02031 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1264 IPR027417 -
Rops6g02031 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02031 1272 MobiDBLite consensus disorder prediction 1 36 - -
Rops6g02031 1272 Gene3D ABC transporter type 1, transmembrane domain 44 627 IPR036640 GO:0005524|GO:0016020
Rops6g02031 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1264 IPR003439 GO:0005524
Rops6g02031 1272 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02031 Rops-Chr6 38258497 38264325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02031 33 1271 Calmodulin-binding Proteins AT2G36910 44.683 0.0 1039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02031 K05658 - gmx:100800034 2071.59