Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02030 ATGGGTGTGGAGAATGGCCTTGAAGGCGAGGGGAATAAACATGATGAGGCGACCACATCAGAGAATCATGCAGAAGCCAGCACAAACGGGGAAAAGGAAGAAAAGAGCAAACGAAAAGAAAAACCTGAGACAGTTCCATTTCACAAATTGTTCTCTTTTGCAGACTCCACTGACATTCTGTTGATGGCTATTGGAACCATTGGTGCCATTGGAAATGGCATGGGTTTGCCTCTCATGACATTACTGTTTGGTCAAATGATTGATAGCTTCGGCGGTAACCAGCAAAGCTCCGACGTAGTGGATCAAGTGTCCAAGGTATCTCTGAAGTTTGTATATTTGGCAGTAGGAAGTGGGATGGCAGCATTCCTCCAGGTGACTTGCTGGATGGTAACAGGGGAAAGGCAGGCTGCACGAATAAGGGGATTGTATTTGAAAACTATACTAAGACAAGATGTTGCTTTCTTTGATAAGGAAACAAATACTGGAGAAGTTATAGGGAGAATGTCAGGTGATACGGTTCTCATACAAGATGCTATGGGTGAGAAGGTTGGGAAATTTCTACAGCTAATAGCAACATTCATTGGAGGCTTTGTGATAGCCTTTGTCAAAGGGTGGCTTCTTACGGTTGTCATGTTGTCCACTCTTCCACTCCTTGTTGTCTCAGGTGCCGCTATGGCCTTCACCATAGGCAAGATGGCTTCCCGAGGTCAAACTGCTTATGCAAAAGCTGCACATGTAGTTGAACAGACAATTGGCTCAATAAGAACAGTTGCATCCTTTACTGGGGAAAAGCAAGCAGTATCCAGTTATAGCAAATTTCTTGTAGATGCTTATAAATCAGGAGTTCATGAAGGTTCCATAGCTGGAGTAGGCCTAGGCACAGTTATGTTTGTTATTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATATAATGGAGGCACGGTGATTAATGTGATTATTGCTGTGTTAACTGCTTCCATGTCTCTTGGCCAGGCATCCCCTAGCATGAGTGCTTTTGCTGCGGGTCAGGCTGCAGCTTACAAAATGTTTCAGACAATTGAGAGGAAGCCAGAGATAGATGCTTATAATCCAAATGGAAAAATATTAGAGGATATTCAAGGTGAAATAGAGTTAAGGGAAGTTTATTTCAGTTATCCAGCCAGACCTGAGGAGCTGATATTCAATGGATTCTCTCTTCACATACCTAGCGGCACAACTGCTGCATTAGTTGGACAAAGTGGAAGTGGAAAGTCTACTGTTATCAGTTTGGTAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGAATTAACTTGAAAGAATTTCAGCTTAGGTCGATCAGAGGAAAAATTGGCCTAGTCAGTCAGGAGCCAGTGCTGTTTGCATCTAGCATCAAGGATAACATTGCATATGGAAAGGAGGGAGCAACAATTGAAGAGATAAGATCTGCATCTGAACTTGCAAATGCTGCTAAATTCATTGATAAACTGCCACAGGGATTGGACACAATGGTTGGAGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGCGTATTGCCATTGCAAGAGCAATCCTGAAAAATCCAAGAATTCTACTCCTGGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAAAGGATAGTTCAAGAGGCTCTAGACAGGATCATGGTCAACAGAACTACAGTTGTGGTGGCTCATCGCTTGAGCACAGTGAGGAATGCTGATATGATTGTTGTAATTCATAGAGGGAAGATGGTTGAGAAAGGAACACACTCGGAATTACTCGAGGATCCCGAGGGAGCTTACTCTCAACTGATACGCCTGCAAGAAATAAACAAGGAATCAGAAGAAACTGCTGATCATCACAACAAGAGTGAACTTTCTGTAGAATCCTTTAGACAGTCTAGTCAAAGGAGGTCACTTCAAAGATCTATTAGTAGGGGATCATCTGCAGGGAATAGTAGCCGCCATTCATTTTCAGTTTCGTTTGGTTTACCAACAGGAGTTAACGTGCCTGATCCTGAACATGAAAACTTGCAACCCAAAGAACAAGCACAACAAGTTCCACTAAGCCGCCTTGCTTCCCTTAACAAGCCAGAGATTCCAATTCTTCTGATCGGATGTTTAGCTGCCATAGGAAATGGTGTTATATTTCCAATATTTGGCGTTTTGATTTCCAGTGTCATCAAAACATTTTATGAACCATTTGATGAGATGAAAAAGGACTCCAAGTTTTGGGCACTAATGTTTATGGTACTTGGTCTTGCATCATTAGTGGTGATTCCAGCCCGAGCATACTTTTTCTCGGTGGCCGGATGTAAGTTAATCCAACGTATCAGGTTAATATGTTTTGAGAAGGTGGTCAACATGGAAGTTGGTTGGTTTGATGAGGCTGAAAACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCTTCTGTGCGTGCCCTTGTGGGTGATGCACTAGGACTATTAGTTCAAAATTTAGCATCTGCATTGGCAGGTTTGATTATTGCTTTCGTTGCGAGCTGGGAGCTGGCATTGATTATACTTGTTTTGATTCCCCTGATTGGCCTAAATGGATATGTTCAAATGAAATTCATGAAGGGATTCAGCGCAGATGCAAAGATGATGTACGAGGAAGCTAGCCAAGTTGCTAATGATGCAGTCGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCTGAAGATAAAGTTATGGAACTATACAGGAAGAAATGTGAAGGCCCCATGAAAACAGGGATAAGGCAAGGGTTGATCAGTGGATCAGGATTTGGGGTTTCATTTTTCTTGCTGTTTTGTGTCTATGCAACCAGTTTCTATGCAGGAGCTAGACTTGTGGATGCTGGGAAGGCATCATTCTCAGATGTTTTCCGGGTTTTCTTTGCGTTAACTATGGCAGCTATTGGAGTTTCCCAATCAAGCTCCTTTGCTCCTGACTCTAGCAAAGCCAAGTCAGCCACTGCTTCTATATTTGGAATAATTGATAAGAAGTCAAAGATGGATCCGAGTGATGAGTCTGGTACCACGCTGGATAGCGTTAAGGGGGAAATTGAGCTTCGTCATGTGAGCTTTAAGTATCCATCTAGGCCTGATATACAGATTTTCCGAGACCTCAGCTTGGCTATCCATTCTGGCAAGACGGTGGCTCTTGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTGCCTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGAAATCACACTTGATGGGGTAGAAATTCGGGAGTTACAGCTCAAGTGGTTAAGGCAACAAATGGGCCTTGTAAGCCAAGAGCCAGTGTTATTCAATGACACTATCCGTGCCAATATTGCTTATGGAAAGGGAGGCGATGCAACTGAAGCAGAAATCATAGCTGCAGCAGAAATGGCCAATGCACATAAGTTCATTAGTGGCTTACAACAGGGTTATGATACCATGGTGGGAGAGAGGGGAACCCAATTATCTGGAGGGCAGAAGCAAAGGGTAGCCATTGCACGTGCTATAATAAAAAGTCCAAAGATATTGCTACTAGATGAGGCCACAAGTGCATTGGATGCAGAGTCAGAGAGAGTTGTTCAAGATGCATTAGACAAAGTCATGGTGAACAGGACCACTGTGGTTGTGGCACATCGTCTATCTACAATAAAAAATGCAGATGTGATTGCTGTTGTCAAGAATGGAGTTATAGTGGAAAAAGGACGGCATGAAACACTCATTAACGTTAAGGATGGATTTTATGCTTCCTTAGTCCAACTCCACACAAGTGCTTCAACAGTATGA 3858 0.4308 MGVENGLEGEGNKHDEATTSENHAEASTNGEKEEKSKRKEKPETVPFHKLFSFADSTDILLMAIGTIGAIGNGMGLPLMTLLFGQMIDSFGGNQQSSDVVDQVSKVSLKFVYLAVGSGMAAFLQVTCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFVKGWLLTVVMLSTLPLLVVSGAAMAFTIGKMASRGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGSIAGVGLGTVMFVIFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYNPNGKILEDIQGEIELREVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRSIRGKIGLVSQEPVLFASSIKDNIAYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIVVIHRGKMVEKGTHSELLEDPEGAYSQLIRLQEINKESEETADHHNKSELSVESFRQSSQRRSLQRSISRGSSAGNSSRHSFSVSFGLPTGVNVPDPEHENLQPKEQAQQVPLSRLASLNKPEIPILLIGCLAAIGNGVIFPIFGVLISSVIKTFYEPFDEMKKDSKFWALMFMVLGLASLVVIPARAYFFSVAGCKLIQRIRLICFEKVVNMEVGWFDEAENSSGAIGARLSADAASVRALVGDALGLLVQNLASALAGLIIAFVASWELALIILVLIPLIGLNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGLISGSGFGVSFFLLFCVYATSFYAGARLVDAGKASFSDVFRVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGIIDKKSKMDPSDESGTTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIRELQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAEMANAHKFISGLQQGYDTMVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINVKDGFYASLVQLHTSASTV* 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02030 1285 SUPERFAMILY ABC transporter transmembrane region 706 1024 IPR036640 GO:0005524|GO:0016020
Rops6g02030 1285 SUPERFAMILY ABC transporter transmembrane region 42 369 IPR036640 GO:0005524|GO:0016020
Rops6g02030 1285 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Rops6g02030 1285 FunFam ABC transporter B family member 1 375 624 - -
Rops6g02030 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1278 IPR027417 -
Rops6g02030 1285 SMART AAA_5 1067 1260 IPR003593 GO:0016887
Rops6g02030 1285 SMART AAA_5 412 598 IPR003593 GO:0016887
Rops6g02030 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Rops6g02030 1285 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524|GO:0016887
Rops6g02030 1285 FunFam ABC transporter B family member 1 698 1006 - -
Rops6g02030 1285 MobiDBLite consensus disorder prediction 643 672 - -
Rops6g02030 1285 PANTHER ABC TRANSPORTER B FAMILY 25 626 IPR039421 -
Rops6g02030 1285 MobiDBLite consensus disorder prediction 8 42 - -
Rops6g02030 1285 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Rops6g02030 1285 CDD ABC_MTABC3_MDL1_MDL2 1040 1278 - -
Rops6g02030 1285 FunFam ABC transporter B family member 1 1030 1280 - -
Rops6g02030 1285 MobiDBLite consensus disorder prediction 1 42 - -
Rops6g02030 1285 Pfam ABC transporter 1059 1208 IPR003439 GO:0005524
Rops6g02030 1285 Gene3D ABC transporter type 1, transmembrane domain 108 1014 IPR036640 GO:0005524|GO:0016020
Rops6g02030 1285 ProSitePatterns ABC transporters family signature. 1180 1194 IPR017871 GO:0005524|GO:0016887
Rops6g02030 1285 MobiDBLite consensus disorder prediction 628 642 - -
Rops6g02030 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 719 1005 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02030 1285 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 346 - -
Rops6g02030 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02030 1285 MobiDBLite consensus disorder prediction 628 672 - -
Rops6g02030 1285 Gene3D - 1030 1284 IPR027417 -
Rops6g02030 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1040 1277 IPR003439 GO:0005524
Rops6g02030 1285 CDD ABC_6TM_Pgp_ABCB1_D2_like 708 1023 - -
Rops6g02030 1285 FunFam ABC transporter B family member 9 49 381 - -
Rops6g02030 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 623 IPR027417 -
Rops6g02030 1285 Gene3D - 383 640 IPR027417 -
Rops6g02030 1285 Pfam ABC transporter transmembrane region 63 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02030 1285 Pfam ABC transporter transmembrane region 718 990 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02030 Rops-Chr6 38221146 38227784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02030 38 1279 Calmodulin-binding Proteins AT2G36910 45.933 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02030 K05658 - gmx:100800034 2211.42