Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02021 ATGCAACAACACCGCCGTGAATTGACCTTCTTAAGCTCCGCCGACTTCCTCCTCCAGAATCTTGATGCTACAACTGTCAACACCGGAGAGCATAACGATACTTCCATGAAAGAAGTGGATTTCTTATCATCTGGTTCAACACCAAAGAATATTGATAACCAGCAGCAGCCTCATCATGAGCAAGAGAACACACATCATAGTAACAAGATCGTTGAAGATAAAACAGCAGCTCTTTTCACTGATCAACTCATAGACACCTCACTGAATTTAACGTGTGCAAGTGTTGGAATGTCAAGAACACCCAAGGAAGAAAATCATAAAATTTTGGTGGGTACGCTTCAGAAGGAATTACTGAGAATACATGAAGAGAATTGCAAGTTAAGAACTATGCTGGACCAAATTACCAAAAATTGTAGCCAACTACAATTGATCATCGCTTTGCAGAAACAAAGGCCTTACCAGAAGGTGGAGATACATGGGTCTGGTCAACATTTTATGGACCCAGGGCCATGCACCAAATTAGACGTCAATGCAGCATCGGTTTCTAATGATAAGACTGGTCAAGAAGATTTGGTTTCTCCCTCAAACAAAGCTGAAGTAATTACATCAAAGCAACGTGACCATCATTTGACTAATCTTAATATTGGAAAGCAGGCTTATCCAGAAGATGTTCTTGACCAGTCATCCTCACTTAGTTGGGGGTCATCCAAGAGTCCCAAGTTAGAAGTATCCAAAACTGGCGAGCTTCCTTTCAGAAAAACCAGGGTTTCCGTGCGTGCAAGATCTGAAGCTCCTCAGATGAGCGATGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCAAAGGGTAACCCTTGTCCACGTGCTTATTATCGCTGCACTATGGGAGTAGGAGGATGCCCAGTTCGTAAGCAGGTGCAAAGATGCGCAGATGACAAGACAGTGTTGATAACAACTTACGAAGGGAATCATAATCACCCTCTTCCACCAGCAGCCACTGCCATGGCCAATTCTACATCAGCAGCTGCATCCATGCTCATGTCTGGTTCAGTTTCAACAACGAGCAACGAAACACTAATGAACTCTGCAGGATATTTCTCTTCACTTCCCTTCATCTCAATGTCACCCTCTGCACCATTCCCCACTATCACCCTCGACATGACCCACCCCATGACATTCCCTATGCCATTTCATGCAGCTTCTTTTCCTCAGTTACTAGGCCACCCCTTTATCTTCCCTCAAAAGCTACCACCTGCAGGTATGCCCCTACTTCAACTAGGGCAACGTAAACCTTCATCTGTGGTGGAGACGATCACTGCAGCCATTGCTTCCGATCCGAACTTCAATGCAGTGCTGACAGCTGCTATCTCATCAATTATTGGGGCACCAAGAGGGAGTGATGGAAATTATAATAATATTAGTAATAATGGTGGAAGTGCAATTTCCCTTAATGGGACGTCTGTGTTGCCCGGGTCCACGCGGCTTCCGCAGTCATGCACTACATACCAAGTTACCAACTAG 1521 0.4464 MQQHRRELTFLSSADFLLQNLDATTVNTGEHNDTSMKEVDFLSSGSTPKNIDNQQQPHHEQENTHHSNKIVEDKTAALFTDQLIDTSLNLTCASVGMSRTPKEENHKILVGTLQKELLRIHEENCKLRTMLDQITKNCSQLQLIIALQKQRPYQKVEIHGSGQHFMDPGPCTKLDVNAASVSNDKTGQEDLVSPSNKAEVITSKQRDHHLTNLNIGKQAYPEDVLDQSSSLSWGSSKSPKLEVSKTGELPFRKTRVSVRARSEAPQMSDGCQWRKYGQKMAKGNPCPRAYYRCTMGVGGCPVRKQVQRCADDKTVLITTYEGNHNHPLPPAATAMANSTSAAASMLMSGSVSTTSNETLMNSAGYFSSLPFISMSPSAPFPTITLDMTHPMTFPMPFHAASFPQLLGHPFIFPQKLPPAGMPLLQLGQRKPSSVVETITAAIASDPNFNAVLTAAISSIIGAPRGSDGNYNNISNNGGSAISLNGTSVLPGSTRLPQSCTTYQVTN* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02021 506 FunFam probable WRKY transcription factor 31 252 330 - -
Rops6g02021 506 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 102 475 IPR044810 GO:0003700
Rops6g02021 506 SMART WRKY_cls 267 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops6g02021 506 Gene3D WRKY domain 252 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops6g02021 506 MobiDBLite consensus disorder prediction 40 68 - -
Rops6g02021 506 SUPERFAMILY WRKY DNA-binding domain 260 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops6g02021 506 ProSiteProfiles WRKY domain profile. 262 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops6g02021 506 MobiDBLite consensus disorder prediction 40 54 - -
Rops6g02021 506 Pfam WRKY DNA -binding domain 269 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02021 Rops-Chr6 38140363 38143002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02021 3 502 WRKY Transcription Factor Family AT4G01720 38.476 4.34e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops6g02021 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02021 - - gmx:100780044 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02021 6 38140363 38143002 Rops6g02021 6 38140363 38143002 ECH
Rops8g03830 8 79000712 79003817 Rops6g02021 6 38140363 38143002 PCT