Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02019 ATGGGCAAAGCTTCTAGTTCTTCCTCTTCATCTATCAGCAGCAGGAGGAACCCTGCTATTTCAACTGCATCCTCTATAACACACCAAAACACTGAAGACCTTCACACAGATCTTAGGCTCGGACTCAGCATTTCAGCCACTCAGCATGTTGGCTCTTCTACTTCAAGGGGGCACTGGCAACAAATCCACCAACCACATCAAGGTGCTGAAGTAAATGATTGCAGCGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTCAATTTATTAGCTCATGATGGGTACCAAGAGTTAGTAAACACCCTTGAACAAATGTTCGACACTACAATTCTATGGGGGACTGAGATGGATAGAGTGCAATCAGAGAGATGCCATGTGCTAACTTATGAAGATGGAGAAGGAGACTTGATTATGGTTGGGGATGTCCCTTGGCAGATGTTCTTATCAGCTGTGAAGAGGTTGAAGATCACCAGGGTCGACACATTCGGGAGTTAA 519 0.4489 MGKASSSSSSSISSRRNPAISTASSITHQNTEDLHTDLRLGLSISATQHVGSSTSRGHWQQIHQPHQGAEVNDCSDHSSFFVKVYMEGIPIGRKLNLLAHDGYQELVNTLEQMFDTTILWGTEMDRVQSERCHVLTYEDGEGDLIMVGDVPWQMFLSAVKRLKITRVDTFGS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02019 172 Gene3D - 73 171 - -
Rops6g02019 172 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g02019 172 SUPERFAMILY CAD & PB1 domains 75 164 - -
Rops6g02019 172 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 40 167 IPR003311 GO:0005634|GO:0006355
Rops6g02019 172 Pfam AUX/IAA family 67 166 IPR033389 -
Rops6g02019 172 ProSiteProfiles PB1 domain profile. 79 169 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02019 Rops-Chr6 38083744 38084615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02019 83 164 B3 DNA Binding Superfamily AT4G23980 41.463 1.91e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops6g02019 AUX_IAA 5.1e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02019 K14484 - gmx:100781660 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02019 6 38083744 38084615 Rops6g02019 6 38083744 38084615 ECH
Rops8g03833 8 79056855 79057685 Rops6g02019 6 38083744 38084615 PCT