Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02016 ATGGCTAACAAGATACTCATACTTGACTCCACCCAAGCAGGGACGACAAGAAGCTCCTCCTATATTTATGACAATGATTCACTCGAGCTGGTATGGAAAAATGGTCAAATTCATGTGCAAGGAGTTTCAGCATCAAGTGCCACACGAAAGACTCCATCATGCGATGGACATTCAAAGAAAGCAATTAATGAAGATGCCCGCATTGCAAAAAGTGCAAAGTTAACTCATCAGCCAGCTACTACTGGGAATAGTAACTCATACACATCTTCCACAAATCAGTTTTCAGATCCGTTCAAGAAACCAAGAATGGATTCAAGCCAAACACCAGCAACAAACTCACAGAAACTCTCCGACGTTTTGAGACCTTTACTGTTTCTTAAATCCACTTACCAGGGAAACACTACAACACTGCCCACAAACAATACAGTTTTAGCACAAGTGGAGGTTGCAAAGGCTGCTCCTGATTGTTCCATGGTGATTGACTCATCTAAAGGATCATCACATGGACTTCAAGGGCCAAAATTTTTAACTTCTTCTGATGCACCAAATTGGGTCTCCTTTGTTCCAAGAAGTCAGGAAATACCTCCTGACCAACAGTCCGAAGCTGTTGGTCAATATTCTAACCAAACCACAAGCTCAGCAGGACTTAATAAAACAAAGGGAAAAGCTGATACTAACTATTTTGATGAACCCTTGCATGAATCATCTTCCATATGCTCGCTTGGAGCCTCAAGTAACACAAATGAATCAACATATTTAAGCGATAATAATGAAGAAGAACCAGAAGATGTAGTGAAGGAGAAGATTGCCCGGGAGGGAACCAGAGTCAAGAAAAGGAGGAATATAGAGATTCATAGTTTATATGAAAGGAAGCGAAGAGATAAGATCAACAAGAGGATGCGTACATTGAAAGAGCTCATACCCAATTGCAAAAAGATGGACAAAGCTTCAATGCTAGACGATGCCATCGAATATCTTAAGACCCTAAAGCTTCAGTTACAGATTATGTCAATGGGTGCTGGGTTTCGTATGCCTCTTATGATGTTACCTAATGCCACTCATCATATGATCAACACATCCCATTTATCACAGTTAATGGGAGCTGGAATGGGCTTCAGACCAGGCACAGGCATCCCTTGCAGCCTACCTCAGTTCCCTATTGCACCTTTGCCTGCTATCAATGGAGTTCGGATGTTTGGTTTCCCTAACCAAGTGCCAGTGCCAATGCCAACCATGCCGATTTCTCATGCACCTTTCATTCCTATGGTTGGAAATCCTTCTACGCAACCACTTCTGGCAACTAGCATAGCTAACAAACTGGTGGAAAACCAAGCTTCTGCCCAGTTAACTACTCTGATGACCTCAGTCAGTCCCCAAGAACTCATATCTTAA 1392 0.4231 MANKILILDSTQAGTTRSSSYIYDNDSLELVWKNGQIHVQGVSASSATRKTPSCDGHSKKAINEDARIAKSAKLTHQPATTGNSNSYTSSTNQFSDPFKKPRMDSSQTPATNSQKLSDVLRPLLFLKSTYQGNTTTLPTNNTVLAQVEVAKAAPDCSMVIDSSKGSSHGLQGPKFLTSSDAPNWVSFVPRSQEIPPDQQSEAVGQYSNQTTSSAGLNKTKGKADTNYFDEPLHESSSICSLGASSNTNESTYLSDNNEEEPEDVVKEKIAREGTRVKKRRNIEIHSLYERKRRDKINKRMRTLKELIPNCKKMDKASMLDDAIEYLKTLKLQLQIMSMGAGFRMPLMMLPNATHHMINTSHLSQLMGAGMGFRPGTGIPCSLPQFPIAPLPAINGVRMFGFPNQVPVPMPTMPISHAPFIPMVGNPSTQPLLATSIANKLVENQASAQLTTLMTSVSPQELIS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02016 463 CDD bHLH_AtPIF_like 280 342 IPR047265 -
Rops6g02016 463 Gene3D - 276 337 IPR036638 GO:0046983
Rops6g02016 463 MobiDBLite consensus disorder prediction 74 114 - -
Rops6g02016 463 PANTHER TRANSCRIPTION FACTOR PIF3 79 452 IPR044273 GO:0003700|GO:0006355
Rops6g02016 463 MobiDBLite consensus disorder prediction 194 220 - -
Rops6g02016 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Rops6g02016 463 SMART finulus 286 335 IPR011598 GO:0046983
Rops6g02016 463 MobiDBLite consensus disorder prediction 194 222 - -
Rops6g02016 463 MobiDBLite consensus disorder prediction 72 114 - -
Rops6g02016 463 Pfam Helix-loop-helix DNA-binding domain 285 329 IPR011598 GO:0046983
Rops6g02016 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 353 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02016 Rops-Chr6 38054844 38057321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02016 189 439 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 37.358 8.98e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g02016 HLH 9.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02016 K12126 - gmx:100818543 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02016 6 38054844 38057321 Rops6g02016 6 38054844 38057321 ECH
Rops8g03834 8 79083376 79086005 Rops6g02016 6 38054844 38057321 PCT