Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01997 ATGGCTTCCATTATAAATGTTTCTTCTTCCATATACAAAACACCTTCTACGGAACTGCTTAAAAAACGACCAACCGCCACAACGGTTTCTGTTCCGTTGTTGGACAACAAGTCCCGCTTCAACAACAACCTTCTCCGAACTCACTTTAACAACCCTTCAAGGGTTTGTTTTGTTCCTTCAGCCATTGCCACCCCCAACTCTTCCCTCCTCACCGAACAACACTTAAAGGGTTTAGGTTTGGACGATGTTAGTGGTGACAACCAATTTGGCTATGACCATGAACCTGAAAACTCCCCTGTCACTGTCAGCGAGGACCAACTCGACATTTCCAAGCTTGTTTTGCCTTCACAACTTGTTGATTCCCTCCAGAAGCGTGGAATCAGTAATCTTTTCCCCATTCAGAGAGCTGTGTTACTGCCTGCGCTGGAAGGTAGAGATATCATTGCTCGGGCAAAGACCGGGACTGGGAAGACATTAGCATTTGGAATTCCAATTATTAAAAGACTCACTGATGATGAACAAAGTCCTCAGAGGCGGTCTGGTCGGCTTCCTAGATTATTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCACCTTATCTAAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGCAACACAGCAAAATGCACTTTCGCGTGGCGTTGATGTGGTGGTTGGAACACCTGGCAGAATAATCGACTTAATAAATGGGAACAGCCTTAAACTGAGTGAAGTTCAATATTTGGTCCTTGATGAAGCTGATCAGATGCTGGCTGTTGGATTTGAGGAGGATGTGGAAGTAATTTTAGAAAAGGTTCCATCTCAGCGGCAGACCATGCTTTTCTCTGCAACAATGCCAGGCTGGGTGAAGAAATTGTCAAGAAAATATTTGAACAATCCATTAACAATTGATTTGGTCGGTGACGAAGAAAAAAAGCTTGCTGAAGGGATCAAACTTTATGCTATATCAGCCACTGCAACTTCAAAGCGGACGATGCTTTCTGATCTTATTACCGTTTATGCAAAAGGTGGGAAGACTATTGTTTTCACGCAGACGAAAAGAGATGCTGATGAGGTATCATTGTCATTAACAAATAGTATAGCTTCTGAAGCACTGCATGGTGACATCTCTCAACATCAGAGAGAGAGAACGTTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTACTGCTGTTCTTATGTACACCAGTAGCCAGAGGAGAACTGTTAGATCCCTTGAGCGTGATGTAGGCGGAAAATTTAAATTTATTTGTCCACCAGCTATGGAAGAAATTTTGGAATCATCGGCTGAGCAAGTTGTTGCTACACTTAATAGAGTTCATCCTGAGTCTATTGAGTTTTTCACTGCATCTGCACAAAAACTGGTTGAGGAACAAGGAGCAAGTGTCCTTGCAGCTGCACTAGCACAGCTGAGTGGATTCTCTCGACCTCTGTCATCCCGGTCTCTTATCAACCATGAACAGGGATGGATTACATTACAACTGACTCGAGATCCAGATACTTCTGGAAGATTTCTTTCTGCAAGATCAGTCACAGGGTTTCTTTCAGACGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATATATCTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCTGAGGACGTTGCTAAGGAGTTACTCAGTAAGGACTTACCACCTGGAAACACTATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTACTATGGGAAGTTTTCTGACAGAGATCAAAGTAACCGAAGAGGTTCTAAGGATCGGAGAGGTTTTAAAACCTCCGGGCGATGGGGTGGGGACCAAGACTCTGATGATGAGTTTGGTGATTCAAATAGGAGAGGTGGTAGAAGTTATAGATCTGGCAACAGCAGGTCTCGAATGGGAAGAAGCAGCGGAGATGACTGGCTAATTGGAGGTCCACGATCAAGCAGAGGCAGCTATGGAGGGGCCTGTTTTAATTGTGGACAAACTGGGCACCGGGCATCAGATTGTCCCAAAAAACGAGACTTTTTTTAA 2235 0.4385 MASIINVSSSIYKTPSTELLKKRPTATTVSVPLLDNKSRFNNNLLRTHFNNPSRVCFVPSAIATPNSSLLTEQHLKGLGLDDVSGDNQFGYDHEPENSPVTVSEDQLDISKLVLPSQLVDSLQKRGISNLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPIIKRLTDDEQSPQRRSGRLPRLLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYATQQNALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKVPSQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGDEEKKLAEGIKLYAISATATSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLSLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMYTSSQRRTVRSLERDVGGKFKFICPPAMEEILESSAEQVVATLNRVHPESIEFFTASAQKLVEEQGASVLAAALAQLSGFSRPLSSRSLINHEQGWITLQLTRDPDTSGRFLSARSVTGFLSDVYSPAADEVGKIYLIADERVQGAVFDLPEDVAKELLSKDLPPGNTISKITKLPPLQDDGPPSDYYGKFSDRDQSNRRGSKDRRGFKTSGRWGGDQDSDDEFGDSNRRGGRSYRSGNSRSRMGRSSGDDWLIGGPRSSRGSYGGACFNCGQTGHRASDCPKKRDFF* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01997 744 Pfam GUCT (NUC152) domain 535 635 IPR012562 GO:0003723|GO:0004386|GO:0005524
Rops6g01997 744 Gene3D - 330 532 IPR027417 -
Rops6g01997 744 ProSiteProfiles Zinc finger CCHC-type profile. 724 739 IPR001878 GO:0003676|GO:0008270
Rops6g01997 744 CDD DEADc 118 315 - -
Rops6g01997 744 SMART helicmild6 368 448 IPR001650 -
Rops6g01997 744 CDD SF2_C_DEAD 328 457 - -
Rops6g01997 744 SUPERFAMILY Retrovirus zinc finger-like domains 708 742 IPR036875 GO:0003676|GO:0008270
Rops6g01997 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 469 IPR027417 -
Rops6g01997 744 Gene3D - 108 318 IPR027417 -
Rops6g01997 744 FunFam ATP-dependent RNA helicase RhlE 100 317 - -
Rops6g01997 744 Gene3D - 712 742 - -
Rops6g01997 744 SMART c2hcfinal6 723 739 IPR001878 GO:0003676|GO:0008270
Rops6g01997 744 FunFam Nucleolar RNA helicase II 336 526 - -
Rops6g01997 744 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 314 IPR014001 -
Rops6g01997 744 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 488 IPR001650 -
Rops6g01997 744 MobiDBLite consensus disorder prediction 688 702 - -
Rops6g01997 744 Pfam DEAD/DEAH box helicase 131 303 IPR011545 GO:0003676|GO:0005524
Rops6g01997 744 Pfam Helicase conserved C-terminal domain 341 448 IPR001650 -
Rops6g01997 744 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 101 689 - -
Rops6g01997 744 Pfam Zinc knuckle 723 739 IPR001878 GO:0003676|GO:0008270
Rops6g01997 744 SMART ultradead3 126 331 IPR014001 -
Rops6g01997 744 CDD GUCT_Hera 542 622 - -
Rops6g01997 744 MobiDBLite consensus disorder prediction 648 686 - -
Rops6g01997 744 MobiDBLite consensus disorder prediction 616 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01997 Rops-Chr6 37827503 37833500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01997 133 470 Eukaryotic Initiation Factors Gene Family AT1G72730 38.905 9.37e-65 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01997 - - gmx:100815040 1109.36