Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01995 ATGGTTTGCAGCAGGGTATGGTGGCCACACCTGGTTATTTTAACCCTTAGCTTCTCTTCAACTTTCTCTCCCTCATTGGCTTGTTACCAGTGTCAATCAGGTTTTCCCTTGCAAGTTTGTGTAAAAATGTCTTCCTCAAGGCCTGGCCAATCGTCCAGCAATTCAGGGAGATCAAGACATAGTGCTAGGATTATTGCTCAGACCACTGTAGATGCAAAACTCCAAGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCCAGTTCAGTGCGCGTCTCTGGTACAGTTGATGGAGAAAATCAACCAAGGTCCAACAAAGTAACAACTGCTTACCTCCATCACATACAGAGAAGCAAGCTGATCCAGCCTTTTGGGTGCTTGCTAGCTTTAGATGAGAAAACATGCAAGGTCATTGCATACAGTGAGAATGCACCTGAAATGCTGACCATGGTGAGTCATGCTGTCCCCAGTGTTGGCGACCACCCTGCCCTTGGCATTGGCACTGATATAAGAACTATATTCACTGGGCCAAGTGCTTCTGCATTACAGAAGGCACTAGGATTTGGGGAGGTTTCACTTCTTAACCCCATCCTTGTTCATTGCAAGACTTCTGGGAAGCCTTTTTATGCAATTATCCATCGAGTTACTGGTAGTTTGAACATTGACTTTGAGCCAGTTAAGCCTTATGAAGTTCCCATGACTGCAGCAGGTGCCCTGCAATCTTACAAGCTTGCTGCCAAAGCAATTACCCGATTGCAATCTTTGCCTAGTGGAAGCATGGAAAGGCTCTGTGATACAATGGTTCAAGAAGTATTTGAACTTACAGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAGGTGATTGCTGAGATAACAAAGGCAGGCCTAGAGCCATATCTGGGTTTGCACTATCCAGCCACTGATATTCCCCAAGCTTCTCGCTTTTTGTTTATGAAGAACAAGGTCCGGATGATAGTTGATTGTCATGCAAAACATGTGAAGGTTCTTCAAGATGAAAAAATCCCATTTGATTTGACTTTGTGTGGTTCAACCTTAAGGGCTCCTCATAGTTGTCATTTGCAATACATGGCGAACATGGATTCAATTGCTTCCCTGGTTATGGCAGTTGTAGTCAATGACAGCGATGAAGATGGGGATAGCTCTGATGCAGTTCAGCCACAAAAGAGAAAGAGACTCTGGGGTTTGGTAGTTTGCCATAACACCACTCCCAGGTTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAATTAGAATATCAGATTCTTGAGAAGAATATCCTGCGCACCCAGACACTCTTGTGTGATATGCTGATGCGAGATGCACCCCTAGGTATTGTATCACAGAGCCCTAATATAATGGATCTAGTGAAATGTGATGGGGCTGCCCTCTTGTATAAAAACAAGGTATGGATATTAGGAATGACACCAGGTGAATCCCAGATAAGAGAGATAGCTTTATGGCTGTCTGAGTACCATATGGATTCCACAGGTTTGAGTACAGATAGTTTGTCTGATGCTGGGTTCCCAGGGACTCTCGCCCTTGGTGATACTGTATGTGGAATGGCAGCAGTTAGAATAACTTCAAAAGACATAGTTTTCTGGTTTCGATCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAACCTGGTGAAAAGGATGATGGGAGGAAGATGCACCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGGAAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATTCATTCGTTGCAGTTAATACTGAGGAATGCATTCAAAGATACAGAGACTATGGATATAACCACAAATGCAATCAATACAAGACTAAATGATTTGAAGATTGAAGGGATGCAGGAACTGGAAGCAGTGACAAGTGAGATGGTTAGGTTAATTGAAACAGCAACAGTGCCAATTTTGGCACTGGATGTTGATGGGCTGGTCAATGGGTGGAATATAAAAATTGCAGAATTGACAGGTCTTCCAGTTGGTGAAGCTATTGGAAAGCATTTACTCACACTTATTGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTGACTTGGCACTTATGGGTGAAGAAGAGAAGAATGTCCAGTTCGAGATCAAAACGCACGGGTCTAAGATGGATTCTGGTCCTATTAGTTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCGAGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAAAATGTCATGGACAAATTCACCCGAATTGAAGGTGATTACAAGGCAATTGTACAGAACCCCAATCCGTTAATCCCCCCTATATTTGGTACGGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGACAAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGAGAGGTTTTTGGGACCCAAATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTTGGAATTGTACTTAATAAAGCCATGACTGGTTTGGAAACAGAGAAGGTTGCATTTGGTTTCTTTGCTAAAAATGGCAAGTATGTAGAATGCCTGCTTTCTGTGAGTAAGAAATTGGACATAGAGGGCCTAGTTACTGGGGTCTTCTGCTTCTTGCAGCTAGCTAGCCCAGAGCTGCAACAAGCATTACATATTCAGCGCCTATCTGAACAAACTGCTCTGAAGAGACTGAAAGCATTAACTTATATGAAAAGGCAGATCAGGAATCCTTTGTCTGGGATTATGTTTTCCCAGAAAATGTTGGAGGCTACTGACTTAGGAACAGAACAAAAACGACTTCTGCACACTAGTGCTCAGTGCCAGCGCCAGCTTAACAAAATTCTTGATGACTCAGATCTTGACAGTATCATTGATGGCTACTTGGATCTTGAAATGGCTGAATTCACTCTGCATGATGTACTGGTTGCCTCCCTTAGTCAAATCATGACAAAGAGTAATGCAAAGAGCGTCCCAATAGTGAATGATGTTGCAGAGCAGATCATGATGGAAACCTTATATGGTGACAGTCTCAGGCTTCAGCAGGTCTTGGCTGACTTTTTACTCATTTCCATCAATTTTACACCAAATGGAGGTCAGGTTGTTATAGTGGCCTCTCTAACCAAAGAGGAGTTAGGGAAATCCGTCCATCTTGTCAATTTGGAGCTCAGCATAACACATGGTGGTAGTGGGGTGCCAGAAGCATTGCTGAACCAAATGTTTGGAACTAATGGGCTAGAATCTGAAGAAGGTATTAGCCTGCTCATCAGCAGAAAGCTGCTAAAGCTCATGAATGGAGATGTTCGTTATCTAAGGGAAGCTGGCAAATCATCTTTTATCTTATCTGTTGAACTTGCTGCAGCTCATAAGTTGAAAGCTTAA 3501 0.4284 MVCSRVWWPHLVILTLSFSSTFSPSLACYQCQSGFPLQVCVKMSSSRPGQSSSNSGRSRHSARIIAQTTVDAKLQATFEESGSSFDYSSSVRVSGTVDGENQPRSNKVTTAYLHHIQRSKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTGPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLNIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKAGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKIPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWILGMTPGESQIREIALWLSEYHMDSTGLSTDSLSDAGFPGTLALGDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKERSLPWKDYEMDAIHSLQLILRNAFKDTETMDITTNAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILALDVDGLVNGWNIKIAELTGLPVGEAIGKHLLTLIEDSSTDRVKKMLDLALMGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAQDITAQKNVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMTGLETEKVAFGFFAKNGKYVECLLSVSKKLDIEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKALTYMKRQIRNPLSGIMFSQKMLEATDLGTEQKRLLHTSAQCQRQLNKILDDSDLDSIIDGYLDLEMAEFTLHDVLVASLSQIMTKSNAKSVPIVNDVAEQIMMETLYGDSLRLQQVLADFLLISINFTPNGGQVVIVASLTKEELGKSVHLVNLELSITHGGSGVPEALLNQMFGTNGLESEEGISLLISRKLLKLMNGDVRYLREAGKSSFILSVELAAAHKLKA* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01995 1166 FunFam Phytochrome 448 579 - -
Rops6g01995 1166 Pfam Phytochrome region 456 631 IPR013515 GO:0006355|GO:0009584
Rops6g01995 1166 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 260 433 IPR016132 -
Rops6g01995 1166 SMART pas_2 661 727 IPR000014 -
Rops6g01995 1166 SMART pas_2 791 860 IPR000014 -
Rops6g01995 1166 SUPERFAMILY GAF domain-like 240 440 - -
Rops6g01995 1166 ProSitePatterns Phytochrome chromophore attachment site signature. 360 369 IPR013516 -
Rops6g01995 1166 SMART HisKA_10 936 1001 IPR003661 GO:0000155|GO:0007165
Rops6g01995 1166 CDD PAS 670 776 IPR000014 -
Rops6g01995 1166 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 998 1152 IPR036890 -
Rops6g01995 1166 ProSiteProfiles PAC domain profile. 732 788 IPR000700 -
Rops6g01995 1166 PIRSF Phytochrome_conventional 41 1166 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Rops6g01995 1166 Gene3D PAS domain 805 917 - -
Rops6g01995 1166 Coils Coil 440 460 - -
Rops6g01995 1166 Gene3D - 975 1153 IPR036890 -
Rops6g01995 1166 CDD PAS 803 914 IPR000014 -
Rops6g01995 1166 ProSiteProfiles PAS repeat profile. 659 729 IPR000014 -
Rops6g01995 1166 Gene3D PAS domain 653 790 - -
Rops6g01995 1166 Pfam GAF domain 260 443 IPR003018 GO:0005515
Rops6g01995 1166 CDD HATPase_Phy-like 1047 1158 IPR044767 -
Rops6g01995 1166 FunFam Phytochrome 655 786 - -
Rops6g01995 1166 PANTHER OS08G0260000 PROTEIN 109 997 - -
Rops6g01995 1166 SUPERFAMILY PYP-like sensor domain (PAS domain) 806 912 IPR035965 -
Rops6g01995 1166 Gene3D - 448 621 IPR043150 -
Rops6g01995 1166 Gene3D PAS domain 115 363 - -
Rops6g01995 1166 Pfam PAS fold 111 227 IPR013654 GO:0006355
Rops6g01995 1166 Pfam PAS fold 662 776 IPR013767 GO:0006355
Rops6g01995 1166 Pfam PAS fold 792 914 IPR013767 GO:0006355
Rops6g01995 1166 Gene3D - 241 604 IPR029016 -
Rops6g01995 1166 SMART gaf_1 260 453 IPR003018 GO:0005515
Rops6g01995 1166 ProSiteProfiles Histidine kinase domain profile. 943 1162 IPR005467 -
Rops6g01995 1166 ProSiteProfiles PAS repeat profile. 792 844 IPR000014 -
Rops6g01995 1166 SUPERFAMILY PYP-like sensor domain (PAS domain) 665 772 IPR035965 -
Rops6g01995 1166 SMART HKATPase_4 1048 1160 IPR003594 -
Rops6g01995 1166 SUPERFAMILY GAF domain-like 451 629 - -
Rops6g01995 1166 SUPERFAMILY PYP-like sensor domain (PAS domain) 116 228 IPR035965 -
Rops6g01995 1166 PRINTS Phytochrome signature 275 294 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 PRINTS Phytochrome signature 558 577 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 PRINTS Phytochrome signature 175 197 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 PRINTS Phytochrome signature 681 696 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 PRINTS Phytochrome signature 591 609 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 PRINTS Phytochrome signature 662 678 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 PRINTS Phytochrome signature 473 493 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 PRINTS Phytochrome signature 754 771 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 PRINTS Phytochrome signature 360 381 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 PRINTS Phytochrome signature 774 794 IPR001294 GO:0006355|GO:0009584
Rops6g01995 1166 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1048 1158 IPR003594 -
Rops6g01995 1166 NCBIfam PAS domain S-box protein 666 782 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01995 Rops-Chr6 37782958 37789335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01995 43 1163 Histidine Kinase Gene Family AT1G09570 80.570 0.0 1902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01995 K12120 - gmx:100790763 1992.24