Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01988 ATGGGGAGGCATTCTTGCTGTTACAAGCAGAAGTTACGGAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCACCAAACATGGCCACGGATGTTGGAGCTCGGTCCCCAAACTAGCTGGTTTGCAGAGGTGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAGGAAGAGAATTTGATTATTGAACTCCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAAAATCTATGGAATTCCTGTCTGAAGAAGAAGCTAAGGCAAAGTGGCATTGACCCAAACACCCATAAACCACTCTCCGAGGTTGAGAATGACAAGGACAAACCACCCACAGCCGACAAAAGCAATCAGAAAGCCTCAGTGGGATCCAAGGAAGTTATGATGAGTTTGGCTGAGCTAGCAAAACCCAAGCCACTGGAAGTTTATACTAGCTCCAAGATCAACAACAGCAATAGTAGCAGCAGTAATTTGAGCAGCACCCCACCCACCCAGGAATTATTCCTAGATAGGTTTGCTACCTGCCATGACAGCTCCCTCAAACCATCTGATATGGTAGGATACTTTTCTTTCCAGCAGTTGAACTATGGACCAAACATGGGGCTCTCTCCAAATCCCAACACCTCTCTTTCTTTCATACCAACCTCCACTTCTTCCCAGGTCATGTCAGACCTCAATTCTACCATAACCTCTTCTATGCTCCATTCTGTGTCAACCTCAATTTTCTCAACTCCAACACATGTAAAGCCCACTGTTAGTCTCCACTCTAATAACAATCCTTCCATATCCTCCGGTGATATTGATGGGGTTCACAACTGGGAAGCCAGCAACAATAACCACACAAACAAAAGCAATGGGAACAGTAGCAGTATCCAGATACAAAACAGCACCAACTTCCTTGACAACAGCACCATAACTTGGGGGCTTGCAGAGTCAGTGAAGGTTAATAAAGATGCTCATGTAGCAGAACAAGAAGAGATAAAATGGTCTGAGTATCTTAACACCCCGTTTCTTCTGGGAAACACAGTGCAGAATCAAACCTCTCAATCTATCTACAGTGAGGTTAAACCAGAAACAGGTTTCATAACAGATGACTCGTGTACTAGTTGGCACCATAACCAGCTTCACCCACCAGCTTTTCAACTTTCAGATTTATATACCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTGTAG 1293 0.4478 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQSGIDPNTHKPLSEVENDKDKPPTADKSNQKASVGSKEVMMSLAELAKPKPLEVYTSSKINNSNSSSSNLSSTPPTQELFLDRFATCHDSSLKPSDMVGYFSFQQLNYGPNMGLSPNPNTSLSFIPTSTSSQVMSDLNSTITSSMLHSVSTSIFSTPTHVKPTVSLHSNNNPSISSGDIDGVHNWEASNNNHTNKSNGNSSSIQIQNSTNFLDNSTITWGLAESVKVNKDAHVAEQEEIKWSEYLNTPFLLGNTVQNQTSQSIYSEVKPETGFITDDSCTSWHHNQLHPPAFQLSDLYTKDLQRFSVAFGQTL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01988 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Rops6g01988 430 MobiDBLite consensus disorder prediction 128 143 - -
Rops6g01988 430 SMART sant 66 114 IPR001005 -
Rops6g01988 430 SMART sant 13 63 IPR001005 -
Rops6g01988 430 MobiDBLite consensus disorder prediction 300 319 - -
Rops6g01988 430 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops6g01988 430 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops6g01988 430 CDD SANT 17 61 IPR001005 -
Rops6g01988 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Rops6g01988 430 FunFam Myb transcription factor 11 67 - -
Rops6g01988 430 PANTHER MYB DOMAIN PROTEIN 55 1 337 - -
Rops6g01988 430 Gene3D - 11 67 - -
Rops6g01988 430 FunFam MYB transcription factor 68 140 - -
Rops6g01988 430 CDD SANT 69 109 IPR001005 -
Rops6g01988 430 MobiDBLite consensus disorder prediction 119 155 - -
Rops6g01988 430 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Rops6g01988 430 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops6g01988 430 Gene3D - 68 147 - -
Rops6g01988 430 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01988 Rops-Chr6 37726823 37728781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01988 1 430 MYB Transcription Factor Family AT1G09540 51.701 5.64e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g01988 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01988 K09422 - qsu:112017656 577.785