Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01985 ATGCCTCTGTATGAGTTATACCGACTGGCTAGAGAGAAGCTTGGTAAAGAGAGTAACAGCACACGTGCAACTGATCAACCTCCCTCGCCTGAGAATGATTTTTTTGAGCTGGTATGGGAGAGTGGTCAGATCTCAAGTCAGGGCCAGTCCAGTAGAGTTAGAAAGAGTCCATCTTGCAGGAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCCAGAGGTAGAGATAAAGATTTAGCATATGGTAACAATTCAAGGATGGGGAAATTTGTGGATTTAGACTCCTCTGGATTGAATGAGATTCCAATGCCAGTGCCATCCCGTGAGGTGGATTTGAGTCAAGATGAAGATGTGATACCTTGGTTGGATTATACAATGGATGGCTCTTTGCAACATGGATATAGTTCTGATTTCTTACATGAACTATCTGGGGTCACTGAAAATGACCTTCCTGCCTCAAATAATTTTACTCTATTGGATAAAAGAAGTAATGGAAATCAGGTATTTAGGGACACTCATAAGAATTCTGCAGAATTAGGGAATGTTTCGAAGGGTTCTTCAGTTGAACAGGTTGAGATTGCAAGATTTAAAGCTAGCACCTGTCAGTTATACTCGCCATCATCACATCAATGTCAAACACCATTTGTATCTGTTAGATCCAGGGCATCAGATATAACTGAAAATAATAATACAAGTAATGCAAACCAGGATGCGCCTTATGGCGACATTACTCAGATTCCATCTTCCGCAGGTGATTTTTCTAGCCTAAAGGTGCAGAAGCAAGATCCTATAATGCCTAACAATGGTTCCACTGTAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATTGTGAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGTCTTCAGCAAGATCAGACAATATGGGAATTAAGAATAAAGGTGCTGCTTCAACTAGCTGCAATCCTCCTGAGTCAACGCTTGTTGATTCAAGAGGTGAATGTCCAAAGGAATCAACCTTGCACTGCCAGCAGGTTGTGGAGCAAAATAAGGCTGATTTGAAACCTTTGGAGCCAAAATCTCTTGAACAGAATGCTGTAACTTCCAAACACTCAGAGCCTGCTAGCAAAGAGAGTGCTATCAAGATTAATCAAACTTCCAATCAATTTGTTGGTGATAGTGGCACTGAAGTACATTCAGCTGCTGAGAAAAGTATGGAGCCACCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGACGGAGGTTCAGATGATCCAAATCAAAATTTGAAGCGGAAAAGTAGAGACACTGAGGACTCTGAGTGCCATAGTGAAGATGTTGAAGAAGAATCAGTGGGTGTTAAAAAGGCAGCTGCTGGAAGAGGAGGGACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCACAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAATATCTCAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTCTATATGCCTCCAATGATGCTAACTGCAGGAATACAGCACATGCATGCACCACATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGGTTGGGTATGGGTTATGGAATGGGAATGCCTGACATGAATGGTGCATCTTCTAGATTCCCAATGATTCAGGTGCCCCAAATGCAAGGAACTCATATCCCTGTTGCACATATGTCTGGACCCAATGCTTTACATGGGATGGCCAGACCAAATCCTCAAGGTTTTGGGCTTCCAGGACTTGTTGAAAATGTGGATTCAGCTTCAGCATCTGGCTTAAAGGATCCAATGCCAAATGTGGACTCACAAGTTAAGCAAAGCACTGGTGGCCATGACTCAACAAGTCAGATGCCTACCCAGTGTGGAGCAGCAACGGTTGGATTTGAACAGTCATCAACTTTGGTGCATAATAGTGGTCCTGCCTCTGTGGCTAATGACAGTGGATCTATTAATCCTGGTTATGATTGA 2091 0.4328 MPLYELYRLAREKLGKESNSTRATDQPPSPENDFFELVWESGQISSQGQSSRVRKSPSCRSLPSHCLPSHSPRGRDKDLAYGNNSRMGKFVDLDSSGLNEIPMPVPSREVDLSQDEDVIPWLDYTMDGSLQHGYSSDFLHELSGVTENDLPASNNFTLLDKRSNGNQVFRDTHKNSAELGNVSKGSSVEQVEIARFKASTCQLYSPSSHQCQTPFVSVRSRASDITENNNTSNANQDAPYGDITQIPSSAGDFSSLKVQKQDPIMPNNGSTVMNFSHFARPAAIVRANLQNIGLKSGLSSARSDNMGIKNKGAASTSCNPPESTLVDSRGECPKESTLHCQQVVEQNKADLKPLEPKSLEQNAVTSKHSEPASKESAIKINQTSNQFVGDSGTEVHSAAEKSMEPPVASSSVCSGNGADGGSDDPNQNLKRKSRDTEDSECHSEDVEEESVGVKKAAAGRGGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMPPMMLTAGIQHMHAPHMAPFSPMGVGMHMGLGMGYGMGMPDMNGASSRFPMIQVPQMQGTHIPVAHMSGPNALHGMARPNPQGFGLPGLVENVDSASASGLKDPMPNVDSQVKQSTGGHDSTSQMPTQCGAATVGFEQSSTLVHNSGPASVANDSGSINPGYD* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01985 696 Gene3D - 464 527 IPR036638 GO:0046983
Rops6g01985 696 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983
Rops6g01985 696 MobiDBLite consensus disorder prediction 407 423 - -
Rops6g01985 696 MobiDBLite consensus disorder prediction 349 482 - -
Rops6g01985 696 PANTHER TRANSCRIPTION FACTOR PIF3 1 637 IPR044273 GO:0003700|GO:0006355
Rops6g01985 696 MobiDBLite consensus disorder prediction 359 392 - -
Rops6g01985 696 MobiDBLite consensus disorder prediction 297 324 - -
Rops6g01985 696 SMART finulus 475 524 IPR011598 GO:0046983
Rops6g01985 696 MobiDBLite consensus disorder prediction 425 454 - -
Rops6g01985 696 MobiDBLite consensus disorder prediction 14 33 - -
Rops6g01985 696 FunFam Basic helix-loop-helix transcription factor 464 527 - -
Rops6g01985 696 MobiDBLite consensus disorder prediction 297 331 - -
Rops6g01985 696 MobiDBLite consensus disorder prediction 43 65 - -
Rops6g01985 696 MobiDBLite consensus disorder prediction 629 696 - -
Rops6g01985 696 MobiDBLite consensus disorder prediction 641 696 - -
Rops6g01985 696 CDD bHLH_AtPIF_like 469 531 IPR047265 -
Rops6g01985 696 MobiDBLite consensus disorder prediction 43 81 - -
Rops6g01985 696 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983
Rops6g01985 696 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 530 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01985 Rops-Chr6 37690652 37695686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01985 258 598 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 41.739 3.73e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g01985 HLH 7.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01985 K12126 - gmx:100794974 1013.06