Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01984 ATGATAAAGAAGGTGAGCGAACTCTCCATTCTTTGTGGGATTCCGGTATGTACCATAATTTCCAATCCTTTTAATTCTCAGACAGAGGTCTGGCCAGATCCAGAGGGAGCCAAACAGGTGATTGAGAGGTATAAGAATACCTCTGTGATAGACCAAAGCAAGAATGTGAACCAAGAGAGCTTCATCAAGCAGAGGATTGCCAAAGCCCGAGACCAGCTGGATAAGCTGAATCATGAGAATCGTGAGAAGGAGCTGACCATAGACATGTTCAAGTATATACAAAGCAAATCCCTATCGAAAGACATGACCATTGAAGAACTGAAAGATCTCAACAAGTTGATTGAGAAGAAAATGAAGGAGATTGAAATAAGATAG 375 0.4133 MIKKVSELSILCGIPVCTIISNPFNSQTEVWPDPEGAKQVIERYKNTSVIDQSKNVNQESFIKQRIAKARDQLDKLNHENREKELTIDMFKYIQSKSLSKDMTIEELKDLNKLIEKKMKEIEIR* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01984 124 Coils Coil 59 86 - -
Rops6g01984 124 Gene3D - 1 72 IPR036879 GO:0003677|GO:0046983
Rops6g01984 124 SUPERFAMILY SRF-like 1 57 IPR036879 GO:0003677|GO:0046983
Rops6g01984 124 Coils Coil 100 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01984 Rops-Chr6 37679142 37679516 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01984 7 124 MADS-box Gene Family AT5G26630 40.336 4.59e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops6g01984 SRF-TF 6.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01984 - - gmx:100792290 150.214