Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01983 ATGAAATGGCATGCTGTTGCTTCATGGACTTGGGATGCTCAGGATGAAACATGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGATTGTAAGCTTCCTGGGGACGACTGCCCACTGATTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAGGCACATTGCCCAATGTGCCGTCGGGAATGGCAGTTTAAAGGATGA 240 0.4708 MKWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01983 79 SUPERFAMILY RING/U-box 2 78 - -
Rops6g01983 79 CDD RING-H2_APC11 15 77 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Rops6g01983 79 FunFam Anaphase-promoting complex subunit 11 1 79 - -
Rops6g01983 79 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Rops6g01983 79 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 2 78 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Rops6g01983 79 PANTHER RING BOX 2 78 - -
Rops6g01983 79 ProSiteProfiles Zinc finger RING-type profile. 29 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01983 Rops-Chr6 37655787 37658783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01983 29 72 C3H Transcription Factor Family AT1G72220 41.304 1.71e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01983 K03358 - gmx:100775777 190.274