Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01982 ATGACCAGAAAAAAGGTGGAACTCGCCTTGATCAGTGGTGAATCGGCAAGGAAAACAACATTCATGAAAAGGAAGAAGGGTATCATAAAGAAGGTGAACGAACTTTCCATTCTTTGCGGGATTCCGGCCTGTGCTATAATTTCCAGTCCTTTTGATTCTCAAACAGAGGTCTGGCCAGATCCAGAGGGAGCCAAGCAGGTGATTGAAAGGTATAAGAATGCATACGTGATAGACCAAAGCAAGAATATGAACCAAGAAGGCTTCCTCAAGCAAAAGATTGCTAAAGCTCGGGACCAGCTGAATAAGTTGCGTGAGGAGAATCGTGAGAAGAAGCTGACCATGGATATGTTCAAGTATATGGAAAACAAATCCATGCCAAATGACCTGACCATTGAAGAGCTGAAAGATCTCAACAAGCTGATTGAGAAGAAATTGAAAGAGATTGAAATTAAGATAGTCGCACTTAGTTGA 471 0.4183 MTRKKVELALISGESARKTTFMKRKKGIIKKVNELSILCGIPACAIISSPFDSQTEVWPDPEGAKQVIERYKNAYVIDQSKNMNQEGFLKQKIAKARDQLNKLREENREKKLTMDMFKYMENKSMPNDLTIEELKDLNKLIEKKLKEIEIKIVALS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01982 156 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Rops6g01982 156 Coils Coil 86 113 - -
Rops6g01982 156 PANTHER MADS BOX PROTEIN 3 151 - -
Rops6g01982 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops6g01982 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops6g01982 156 Coils Coil 127 156 - -
Rops6g01982 156 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Rops6g01982 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops6g01982 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops6g01982 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Rops6g01982 156 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Rops6g01982 156 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01982 Rops-Chr6 37651500 37651970 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01982 1 152 Type I MADS-box Gene Family AT5G48670 49.673 3.23e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops6g01982 SRF-TF 6.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01982 - - gmx:100792290 181.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01982 6 37651500 37651970 Rops6g01982 6 37651500 37651970 ECH