Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01970 ATGGCTTCGGTTGGTGTGGCACCAACTTCAGGTTTGAGAGAACCCAGTGGTCATGCAGCAGCAGGTGTTGATAGATTGCCAGAGGAAATGAATGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACAGTTGTTGATGGGAATGGAACGGAGGCTGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGACAATAAGCTATATGGCAGAGCGTGTTGTAGGGCATGGATCTTTTGGAGTTGTCTTCCAGGCTAAATGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCGAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGGGTGATTAAACATTATAACAAGTTGAACCAAAGGCTGCCACTGATTTATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACATACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTAAAAGGCGAACCAAATATATCATATATATGTTCTAGATATTATAGAGCACCCGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACATCTGGTCTGTTGGTTGTGTTTTAGCTGAGCTGCTGCTTGGGCAGCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCAAACCTACGGTGCACAGCTTTAGATGCATTGATCCATCCTTTCTTTGATGAGCTTCGTGACCCAAACACTCGCTTGCCAACTGGTCGTTTCCTTCCACCACTATTTAATTTCAAATCTCATGAACTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGGTTCCGGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTAA 1233 0.4234 MASVGVAPTSGLREPSGHAAAGVDRLPEEMNDMKIRDDREMEATVVDGNGTEAGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRLPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALIHPFFDELRDPNTRLPTGRFLPPLFNFKSHELKGVPVEILVKLVPEHARKQCPFLGL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01970 410 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
Rops6g01970 410 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01970 410 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01970 410 FunFam Shaggy-related protein kinase kappa 154 402 - -
Rops6g01970 410 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Rops6g01970 410 MobiDBLite consensus disorder prediction 1 29 - -
Rops6g01970 410 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Rops6g01970 410 FunFam Glycogen synthase kinase-3 beta 58 153 - -
Rops6g01970 410 CDD STKc_GSK3 69 361 IPR039192 -
Rops6g01970 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 404 - -
Rops6g01970 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Rops6g01970 410 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01970 410 SUPERFAMILY Protein kinase-like (PK-like) 73 384 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01970 Rops-Chr6 37472318 37476266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01970 80 386 MAP Kinase Gene Family AT2G43790 35.423 2.92e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Rops6g01970 Pkinase 1.8e-64 CL0016