Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01969 ATGCCGGCGAGGAAGTATTACTGCGACTATTGCGATAAGCAATTCCAAGACACACCAGGGGATCGGAAACGACACGTTCGAGGCATTCAGCACCAACAAGCCAAAGCTCGCTGGTACGATTCTTTCAAATTCGAACAGCAACAACGTCTTCTCCCACCCAAACCCCTCTGCTTTCACTTCGTCAACACGGGATTTTGCCATTACGGTGACTCTTGCAAATATTTTCATCCCAATGCCAACAATATACAGCAGCCACCGCCATCACCAGGGAATAGTATTGGAATGGGAGTGTCATGGGGGAATTTACCACCATCGCTGCAGCCTCCACCTGAGGGTGGATATCCCCCCCTTCCCTTCCTCGACTGGGGCTAG 372 0.5108 MPARKYYCDYCDKQFQDTPGDRKRHVRGIQHQQAKARWYDSFKFEQQQRLLPPKPLCFHFVNTGFCHYGDSCKYFHPNANNIQQPPPSPGNSIGMGVSWGNLPPSLQPPPEGGYPPLPFLDWG* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01969 123 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Rops6g01969 123 PANTHER NUCLEASE-RELATED 1 123 - -
Rops6g01969 123 SUPERFAMILY beta-beta-alpha zinc fingers 4 50 IPR036236 -
Rops6g01969 123 MobiDBLite consensus disorder prediction 81 117 - -
Rops6g01969 123 Gene3D Classic Zinc Finger 3 53 - -
Rops6g01969 123 MobiDBLite consensus disorder prediction 81 95 - -
Rops6g01969 123 SUPERFAMILY CCCH zinc finger 54 78 IPR036855 GO:0046872
Rops6g01969 123 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Rops6g01969 123 SMART c3hfinal6 52 78 IPR000571 GO:0046872
Rops6g01969 123 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 77 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01969 54 88 C3H Transcription Factor Family AT1G04990 60.000 1.26e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops6g01969 zf-U1 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01969 K13152 - gmx:100527203 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01969 6 37468802 37469824 Rops6g01969 6 37468802 37469824 ECH