Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01965 ATGAGTAGTGTCATTCCATTCGTAGCCATGGTTCTAGTGCAATTGGGCTATGCAGGGATGAATATAACCTCAAAGCTTGCAATACAATCTGGCATGCACCCTCTTGTCCTTGTTGCTTATCGCCAAATCTTTGCTACTATATCCCTTGCTCCCTTCGCTTATTGGTTGGAACGGAATACGGTTCCCCGGATGACAATGCGCATTGGGTTCCAGATATTAATATCTTCCTTAACAGGAGTTACAGGAAATCAGGTGCTGTACTTTGTTGGGCTAAAATATTCAACCGCTACAATTGCATGTGCACTAACCAATTTGCTCCCAGCTTTCACTATGGTCCTTGCAGTCCTCTTCAGACAAGAGTATTTGAGAATCAAGACGAGGGCTGGGGTAGCGAAGGTGTTAGGGACAGTCATCAGTGTGGGTGGAGCCCTGCTTTTATCATTTTACCATGGAAAAACCCTTGGTCTAGGTGAGTCAAAAATTCACTGGAGCTATGCAGACAAATTGGAAGCAACAACCCCCTCCGTTGGTGAAACAAACTTGCTTCTTGGCCCTTTTGCTGTAATTGGTAGTTCTCTTGTTTGGGCAGTATGGTTCATAGTTCAAGCAGACATGAGCAAGAGTTTTCCAGCTCCTTACACGAGCAGCCTCTACATGTGTTTCTTGGCAAGTATTCAGTGCGTGGCCATTGCCTTGTGTTTTGAACACAATGTTTCAGCTTGGTCACTCGACAATACGATGAGACTTACTTCTGCGATTTATGCGGGCATTGTTTCCACTGGGCTAGCGTATGTTCTCCTTTCATGGACCATTGAGAGGAAAGGTCCTCTCTATGTTTCTGTATTCTCCCCTTTGCTGCTTATCATCATTGCTGTTGTCAGCTGGGCTCTGCTTCATGAGAAACTATACGTTGGCACTGTGATAGGGTCAGTCCTGATAGTTCTGGGGCTCTATGCTGTTTTGTGGGGAATGAGCAAAGAGATGAATGAGAAAGACACTATTCAAGAGACTGTCACAGAGATCTGCCCTCACAAGTTCGCAAATCTTAATCTAACTGTTCTGGTTCAGCTTCTTCTCCTTTTGAAAGAAGAGATGGGGTTGTCTTTCACCAAACTTTTTAGCCGGCTCTTTGCCAAGAAAGAGATGCGTATTCTAATGGTAGGTCTTGATGCTGCTGGTAAGACTACCATCTTGTACAAGCTCAAGCTGGGAGAAATTGTGACTACCATTCCCACAATTGGATTTAATGTGGAGACTGTGGAATATAAAAATATTAGCTTTACTGTATGGGATGTGGGTGGTCAAGATAAGATTCGCCCTTTATGGAGACACTACTTCCAAAACACACAAGGGCTTATCTTTGTTGTGGATAGCAATGATCGTGACCGTGTTGTTGAGGCTAGAGATGAGCTCCACCGGATGCTGAATGAGGATGAGTTGAGAGATGCAGTGCTCCTTGTATTTGCCAACAAACAAGATCTTCCAAATGCTATGAATGCTGCAGAAATCACAGACAAGCTTGGTCTTCATTCTCTTCGTCAACGCCACTGGTATATTCAGAGTACATGCGCTACCTCTGGGGAAGGACTCTATGAGGGACTGGACTGGCTCTCCAACAATATAGCCAACAAGGCTTAG 1638 0.4457 MSSVIPFVAMVLVQLGYAGMNITSKLAIQSGMHPLVLVAYRQIFATISLAPFAYWLERNTVPRMTMRIGFQILISSLTGVTGNQVLYFVGLKYSTATIACALTNLLPAFTMVLAVLFRQEYLRIKTRAGVAKVLGTVISVGGALLLSFYHGKTLGLGESKIHWSYADKLEATTPSVGETNLLLGPFAVIGSSLVWAVWFIVQADMSKSFPAPYTSSLYMCFLASIQCVAIALCFEHNVSAWSLDNTMRLTSAIYAGIVSTGLAYVLLSWTIERKGPLYVSVFSPLLLIIIAVVSWALLHEKLYVGTVIGSVLIVLGLYAVLWGMSKEMNEKDTIQETVTEICPHKFANLNLTVLVQLLLLLKEEMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01965 545 Pfam EamA-like transporter family 9 147 IPR000620 GO:0016020
Rops6g01965 545 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020
Rops6g01965 545 PANTHER ADP RIBOSYLATION FACTOR-RELATED 365 540 IPR024156 GO:0005525
Rops6g01965 545 NCBIfam small GTP-binding protein domain 380 514 IPR005225 GO:0005525
Rops6g01965 545 CDD Arf1_5_like 382 540 IPR045872 GO:0003924
Rops6g01965 545 ProSiteProfiles small GTPase Arf family profile. 375 541 - -
Rops6g01965 545 SMART rab_sub_5 382 544 - -
Rops6g01965 545 PRINTS GTP-binding SAR1 protein signature 411 435 IPR006689 GO:0003924|GO:0005525
Rops6g01965 545 PRINTS GTP-binding SAR1 protein signature 483 504 IPR006689 GO:0003924|GO:0005525
Rops6g01965 545 PRINTS GTP-binding SAR1 protein signature 438 463 IPR006689 GO:0003924|GO:0005525
Rops6g01965 545 PRINTS GTP-binding SAR1 protein signature 383 406 IPR006689 GO:0003924|GO:0005525
Rops6g01965 545 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 138 - -
Rops6g01965 545 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 323 - -
Rops6g01965 545 SMART arf_sub_2 365 545 - -
Rops6g01965 545 SMART sar_sub_1 365 541 IPR006689 GO:0003924|GO:0005525
Rops6g01965 545 FunFam ADP-ribosylation factor 1 365 545 - -
Rops6g01965 545 Pfam ADP-ribosylation factor family 369 541 IPR006689 GO:0003924|GO:0005525
Rops6g01965 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 543 IPR027417 -
Rops6g01965 545 Gene3D - 368 545 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01965 Rops-Chr6 37429950 37436870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01965 2 323 Nodulin-like Gene Family AT1G09380 60.559 2.11e-146 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01965 - - gmx:100781298 532.717