Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01959 ATGGCACCGAAACCCAAATCTGCCTCCTCCTTCGCCACCTCAGCCCACTCAGCCTACTTCAAACTGAGCGCTGTGGTGGAAGTCAGCTCCGAAGATGATGGCTTCCGTGGCTCTTGGTTTTCTGGTAGGATCATCCGCCGCCTTGCGTCCAACAGGTTCTTGGTGGAGTATGATAACCTGATGGAGGATGAGCAATGCTCCAAGCGCTTGAGAGAAGTCCTGAGTCTTCACCAGCTCCGGCCACTTCCCCCGCCAGAGATCCACCGGGAATTCAAATTCGGAGATGAGGTGGACGCGTTCCACAACGACGGCTGGTGGGAGGGCCACATAACTGAAGATTTTGGGAATGGGAAGTTCGCCGTGTATTTCAGAGCCTCAAAGGAGCAGATCGTGTTTCCCAAGGAGCAGCTCAGGATCCACCGTGAGTGGCTCAATGACGATTGGGTACCACCAATCCAACAACAACCGCAGCAGCAGCAGCAGGACAATGAATTGAAGAAATCGGTGTTGACACCAAATGTGAAGTCTGTTGAAACCATGACAGAAAAGAAGGAGGAGTTTTGCGTGGGGACATTGGTTGAGGTTAGCAGTGATGAAGATGGTTTCCGAGGAGCTTGGTTTTCTGCTACCATTGTTGAGGCAATGGGAAAGGAGAAGTTCCTTATTGAGTACCAGAGCCTGCTGGCTGATGATTCCCAGCTTTTGAGAGAGGAGATTGATACCATGCACATAAGGCCTCATCCGCCAGAAACTTGTGTTATTGATCAATTTAGTCTTCTTGATGAAGTTGATGCTATGTACAATGACGGTTGGTGGGTTGGTGTGATTTCTAAAGTTCTTGAAGACTCGAGGTACATAGTCTACTTCAGGAACAGCAATGAAGAACTAGAGTTTCAGAACTCCCAGTTGAGGCTACATCAGGACTGGATTGATGGCAAATGGGTCATGGCTTCTCAGGCGTTGAAGTTGTGA 972 0.4949 MAPKPKSASSFATSAHSAYFKLSAVVEVSSEDDGFRGSWFSGRIIRRLASNRFLVEYDNLMEDEQCSKRLREVLSLHQLRPLPPPEIHREFKFGDEVDAFHNDGWWEGHITEDFGNGKFAVYFRASKEQIVFPKEQLRIHREWLNDDWVPPIQQQPQQQQQDNELKKSVLTPNVKSVETMTEKKEEFCVGTLVEVSSDEDGFRGAWFSATIVEAMGKEKFLIEYQSLLADDSQLLREEIDTMHIRPHPPETCVIDQFSLLDEVDAMYNDGWWVGVISKVLEDSRYIVYFRNSNEELEFQNSQLRLHQDWIDGKWVMASQALKL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01959 323 Gene3D - 174 257 - -
Rops6g01959 323 CDD Tudor_Agenet_AtDUF_rpt2_4 94 139 - -
Rops6g01959 323 CDD Tudor_Agenet_AtDUF_rpt1_3 20 84 - -
Rops6g01959 323 Pfam Agenet domain 26 84 IPR008395 -
Rops6g01959 323 Pfam Agenet domain 261 315 IPR008395 -
Rops6g01959 323 Pfam Agenet domain 190 249 IPR008395 -
Rops6g01959 323 CDD Tudor_Agenet_AtDUF_rpt2_4 259 305 - -
Rops6g01959 323 CDD Tudor_Agenet_AtDUF_rpt1_3 187 249 - -
Rops6g01959 323 SMART agenet_At_2 255 311 IPR014002 -
Rops6g01959 323 SMART agenet_At_2 89 145 IPR014002 -
Rops6g01959 323 SMART agenet_At_2 185 252 IPR014002 -
Rops6g01959 323 SMART agenet_At_2 18 87 IPR014002 -
Rops6g01959 323 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 179 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01959 Rops-Chr6 37382592 37386036 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01959 197 309 PHD Transcription Factor Family AT5G58610 29.412 4.46e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01959 - - aprc:113871596 481.1