Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01955 ATGGCACTAAAACGCAAATCTGCCTCCTCCTACTTCAAATCTGGCGCTTCCGTGGAAGTCAGCTCCGAAGACGACGGCTTCCACGGCTCTTGGTTTTCCGGCAGGATTATCCGCCGCCTTGCATCGGACAGGTTCTTGGTGGAGTATGATAACTTGATGGAGAACGAGCAAAGCTCCAAGCGCTTGAAAGAAGTCCTCAGTCTTCAGCAGCTTCGGCCACTTCCCCCGACTGAGATCCGCCATGAATTTAAGTTCGGTGACGAGGTGGATGTGTTCCACAACGATGGCTGGTGGGAGGGCCACGTAACCGAAGATTTTGGAAATGGCAAGTTTGCCGTGTATTTCAGAGTGTCGAAGGAGCAGATGTTGTTTTCCAAAGAGGAGCTCAGGATCCACCGCGAGTGGCTCAATGACGGTTGGGTCCCGCCAATCCAACCGCAGCAGCAGCAGAAGCAGGAGAATGAATTGAAGAAAATGGCGTCGACGCCAAATGCAAAGTCTGTTGAAACTGTGACGGAAAAGGAGGAGGAATTTAGCGTGGGGACACTAGTTGAGGTCAGTAGTGATGATGACGGTTTCCAGGGAGCTTGGTTTTCTGCTACCATTGTTGAGACAAAGGGAAAGGAGAAGTTCCTTGTCGAGTACCAGAGCCTGCTGGAGGATGATAATTCCCAGCTTTTGAGAGAGGAGATTGATGTCATGCACATAAGGCCTCATCCGCCAGATACTTATGTTCTTGATCAATTTAGTTTTCTTGATGAAGTTGATGCTTTGTACAATGACTGTTGGTGGGTTGGTGTGATTTCTAAAGTTGTTAGTGACTCGAGGTACATAGTTTACTTCAGGAGCACCAATGAAGAACTAGAGTTTCAGCACTCCCAGCTGAGGCTACATCAGGACTGGATTGATGGCAAATGGGTCATGGCTTCTAAGGGAATCCTCTTGTAA 948 0.4873 MALKRKSASSYFKSGASVEVSSEDDGFHGSWFSGRIIRRLASDRFLVEYDNLMENEQSSKRLKEVLSLQQLRPLPPTEIRHEFKFGDEVDVFHNDGWWEGHVTEDFGNGKFAVYFRVSKEQMLFSKEELRIHREWLNDGWVPPIQPQQQQKQENELKKMASTPNAKSVETVTEKEEEFSVGTLVEVSSDDDGFQGAWFSATIVETKGKEKFLVEYQSLLEDDNSQLLREEIDVMHIRPHPPDTYVLDQFSFLDEVDALYNDCWWVGVISKVVSDSRYIVYFRSTNEELEFQHSQLRLHQDWIDGKWVMASKGILL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01955 315 CDD Tudor_Agenet_AtDUF_rpt1_3 178 241 - -
Rops6g01955 315 Pfam Agenet domain 181 241 IPR008395 -
Rops6g01955 315 Pfam Agenet domain 15 76 IPR008395 -
Rops6g01955 315 CDD Tudor_Agenet_AtDUF_rpt2_4 86 131 - -
Rops6g01955 315 CDD Tudor_Agenet_AtDUF_rpt1_3 12 76 - -
Rops6g01955 315 SMART agenet_At_2 247 303 IPR014002 -
Rops6g01955 315 SMART agenet_At_2 10 79 IPR014002 -
Rops6g01955 315 SMART agenet_At_2 81 137 IPR014002 -
Rops6g01955 315 SMART agenet_At_2 176 244 IPR014002 -
Rops6g01955 315 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 157 311 - -
Rops6g01955 315 CDD Tudor_Agenet_AtDUF_rpt2_4 252 297 - -
Rops6g01955 315 MobiDBLite consensus disorder prediction 142 166 - -
Rops6g01955 315 Gene3D - 167 251 - -
Rops6g01955 315 Gene3D - 3 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01955 Rops-Chr6 37355068 37357861 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01955 188 301 PHD Transcription Factor Family AT5G58610 28.358 5.85e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01955 6 37355068 37357861 Rops6g01955 6 37355068 37357861 ECH