Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01952 ATGTCCGACAACACAGACCAATACGGTGTTCTCCTCTATTACAAGTATGCCGAGATTCCCAACCTCGACGACCTCCTCACATTCTACCATTCCAACTGTTCCTCCCTCGGCCTTCTCGGTCGTGTTCGTCTTTCTTCCCACGGCGTCAACGTCACCGTTGGCGGCAACTTATCCTCTTTGCATGCTCACATTGAAGCCCTCAAAGCCTACAATAGCTTATTTGAAGACACTGATTTCAAGCTTGCAACTTGTCATCACCCTTTGAATGATCAGGTCGCTAAGGAGTGTGGATTCACTTCTCTCTCTATTCGGATCGTCGAGGAACTTGTTACTCTCAGTTCTCATCCACTATTAAAGTCACCAGAAATTTCAAATGCTGGAAGACATCTAGCTGCGTCTGAGTTCCATTCTGTCCTTCAGAATGCTAACAAGGAGAGTCCAGAAAACAGCCTTGTCTTACTTGATGCAAGGAATCTGTATGAAACAAGAATTGGGAAATTTCAGGCACCAAATGTTGAAACTTTGGATCCTCAAGTTAGGCAGTATAGTGATTTGTCCTCATGGATAGATGATAATGGTGAGCAGTTGAAATTCAAAAATATCCTCATGTATTGTACCGGCGGAATCAGGTGTGAAATGGCATCAGCATATATTAGGTCAAAAGGTGCTGGGTTTGAGAACGTGTTTCAGTTATTTGGTGGCATACAACGGTATTTGGAGCAATTTCCAGATGGTGGTTTTTTCAAAGGAAAAAACTTTGTTTTCGATCACCGGGACCAGCTTCTCCATGATTTAAAAGGAAATCTATTGAAGGCTCAGAATCAAATGAAGAAGTATGCTGATCAGTCCAGACGTCCTGTTACTTTGGTTACTGGTGATTGGGTCTATTTGAAGTTACAACCCTATAGGTTGAGATCTTTAGCAAAGAAGCGGAATGCAAAGTTGAGTCCTCGTTTTTATGGGCCGTATCAGATTACTAAACAGATCGGCCCAGTAGCTTTTGAATTGGCTCTTCCCTTTGACAGTAAAATTCATCCGGTATTTCATGTTTCATTGCTCAAGAAAGCTCTTTCTCCTTCGGTTACACCCCAACCTCTTCCGCCAATGCTTTCTGAAGATTTAGAGTTACAAGTTATACCTGCTGCAGTCAAGTCTGTCCGTAACACTGCTAATGGCACTGCTGAGGTGTTGATTCAATGGCAAGATCTTCCTGATTTTGAAGCTACTTGGGAGCCAGTTGCTACCATCATGGAGCAGATAACAGTTGGAAGTTCAGATGATAATATTATTGGTACCTGCCTGATTTGTCAATGTTCATTTGATGATTACTCTTCACGCTGCCGATGTACTTATTGCAGAATGCTTGTGTTGGTTTGTCGTAGTTGCCAGAATGAATCGGCGCTGTATGTTTGTGAGCTATGCCAAAAACAGGGCAAGGCTGTAAGTTCAAAGCAGTTAATTGAAAGTGGTGAATCCAAACTATCATCGCCGGGTGTTGAGTTCCAGAACTTTTCTTCAAATACTATATTCTTGCCTCAAGTGCCTAGAGGAGATGATGTACGGACCTCACGAAAACTAAGAATCTTATGCTTGCATGGGTTTCGACAGAATGCATCAAGTTTTAAGGGAAGGACAGCATCATTAGCCAAAAAATTAAAAAAAATTGCTGAGTTTGTTTTTATAGATGCACCTCATGAATTGCCATTCATTTATCAAACCCCCATGTCAGTGCCCCATGTGAATAGTGCATCATCATCTTCATTGCCTCCCAGTCCTCCTCCACCTTTGGAGAATTGCAAGAAGAAGTTTGCATGGTTTGTGGCACTCAATTTTGGTGGAAGTAGTGGTGTTGATTGGAAGGTTGCAGATAGCCCATTTGATCCACTTCAATACCAGCAACAAACTGATGGATATGATATTTCACTATCACACTTGAAGAATGTGTTCTCCCAAAAAGGGCCATTTGATGGAATCTTGGGATTTTCGCAGGGAGCAGCAATGGCTGCCTTAATCTCTGCTCAACAAGAAAAGCTAAAAGGTAAAATGGACGTTAGATTTGTAGTCTTGTGCTCAGGGTTTGCTCTCCATGTGAAGGAGATGGAGTGTGGTCCTATAAGGTGCCCTTCTCTTCATATTTTTGGTAATGAACATGGTAAAGACAGACAGATAGCCAACCAAGCGAGCAAGGAACTTGCTTCTCTTTATGATGGTGGTTGTTCTGTGATCGTTGAACATGATTGTGGTCATATAATTCCTACTCGGTCCCCGTATATTGATGAGATCAAGGATTTCCTTGGGAGATTTCTGTAA 2310 0.4221 MSDNTDQYGVLLYYKYAEIPNLDDLLTFYHSNCSSLGLLGRVRLSSHGVNVTVGGNLSSLHAHIEALKAYNSLFEDTDFKLATCHHPLNDQVAKECGFTSLSIRIVEELVTLSSHPLLKSPEISNAGRHLAASEFHSVLQNANKESPENSLVLLDARNLYETRIGKFQAPNVETLDPQVRQYSDLSSWIDDNGEQLKFKNILMYCTGGIRCEMASAYIRSKGAGFENVFQLFGGIQRYLEQFPDGGFFKGKNFVFDHRDQLLHDLKGNLLKAQNQMKKYADQSRRPVTLVTGDWVYLKLQPYRLRSLAKKRNAKLSPRFYGPYQITKQIGPVAFELALPFDSKIHPVFHVSLLKKALSPSVTPQPLPPMLSEDLELQVIPAAVKSVRNTANGTAEVLIQWQDLPDFEATWEPVATIMEQITVGSSDDNIIGTCLICQCSFDDYSSRCRCTYCRMLVLVCRSCQNESALYVCELCQKQGKAVSSKQLIESGESKLSSPGVEFQNFSSNTIFLPQVPRGDDVRTSRKLRILCLHGFRQNASSFKGRTASLAKKLKKIAEFVFIDAPHELPFIYQTPMSVPHVNSASSSSLPPSPPPPLENCKKKFAWFVALNFGGSSGVDWKVADSPFDPLQYQQQTDGYDISLSHLKNVFSQKGPFDGILGFSQGAAMAALISAQQEKLKGKMDVRFVVLCSGFALHVKEMECGPIRCPSLHIFGNEHGKDRQIANQASKELASLYDGGCSVIVEHDCGHIIPTRSPYIDEIKDFLGRFL* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01952 769 Coils Coil 262 282 - -
Rops6g01952 769 Gene3D alpha/beta hydrolase 522 769 IPR029058 -
Rops6g01952 769 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 2 282 IPR020936 -
Rops6g01952 769 SUPERFAMILY alpha/beta-Hydrolases 523 769 IPR029058 -
Rops6g01952 769 SUPERFAMILY Chromo domain-like 343 418 IPR016197 -
Rops6g01952 769 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 123 270 IPR036873 -
Rops6g01952 769 ProSiteProfiles Chromo and chromo shadow domain profile. 374 416 IPR000953 -
Rops6g01952 769 SUPERFAMILY FYVE/PHD zinc finger 426 477 IPR011011 -
Rops6g01952 769 Pfam Serine hydrolase (FSH1) 524 760 IPR005645 -
Rops6g01952 769 SMART rhod_4 137 244 IPR001763 -
Rops6g01952 769 Gene3D - 1 110 - -
Rops6g01952 769 FunFam Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 117 272 - -
Rops6g01952 769 FunFam esterase OVCA2 isoform X6 522 769 - -
Rops6g01952 769 Pfam UPF0176 acylphosphatase like domain 9 108 IPR040503 -
Rops6g01952 769 Gene3D - 119 283 IPR036873 -
Rops6g01952 769 FunFam Rhodanese-like domain-containing protein 6 1 110 - -
Rops6g01952 769 ProSiteProfiles Rhodanese domain profile. 147 247 IPR001763 -
Rops6g01952 769 CDD RHOD_YceA 127 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01952 Rops-Chr6 37330537 37336958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01952 419 769 Sulfurtransferasese or Rhodanese AT1G09280 56.338 5.57e-124 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01952 - - gmx:100799148 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01952 6 37330537 37336958 Rops6g01952 6 37330537 37336958 ECH