Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01948 ATGCAAGGCAAGAAGAAAAGGATGGTTCCATCACCATCAGAGACCCAAGTCAAGGGCTTTCAAAGCCTTGTTACAAGTGCTGCTGTCACTGCTGGTGGTTCCCAGTGTTCTCCGGATGACTCGGAGAACTTCTACACCAAACTCACTGAGTTGTTGGAATCCTCTGGACTGAGTCTAATTTTCAATGTCCGAGAAACAATGTTGGACTTATACCTGTTTTACTTGGAGGTGACCAGAAGAGGAGGATATTACCAGGTTGGTCGAGAAAATAAATGGGGTGAAGTGGCCTCTGCCCTTAAATTGGAAGGCAATAATGCAAAGTTATCTGCTCAAGTTGAAAAGCTCTATGCACATCTTCTCTACAAATTCGAGCAATTGTACTTCTACAGGGATCCTGCAAAGCAAGCTGCAGCTAGCAGCACCAGAGATAAGATATTTCAGCAGCTTCATTGTATGATGTTTTTGTTGCATTTTGGTTTTGGGCTGAATATGTACTATTTAACCTCAAAGGGCTCCTTTCTTTTCTCCATACCCTCACCTTTTTTTAAAGGTACACAAAGGGGGAAGAGGAATTCAACGACTAGTTTATCTCAATTACAATTAATGGATAATGAAGATGGTCAGAAGGTTACAAAGATATGCGAGGACTGTGCATGCCCAATGACAGGGGCTGGATATGTAGAACAGCCAGTGCTTCTACCGGCACCCTCGAATGACAAACAAATGAAGAAACGTCGAGGTGCTCCACAGGGACAAAGGAATGCATATCAAATTTTCCTCAAGCAGGAATGTGCCCGATTGAAAACTTGTAGTCAGGTCCCAGATGGCCCAAGAATCCTACGTATGGCTGTTGATGCATGGAAGAAGATGTCTGTGATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAGCAAGGAAAAATTTAAGGAAGCAATGATCACTTACAATAAGCAGCAGAAAATGCAAGATATCAAGGAAGGGAAGAGGCCTAGTCCATGTGGTGGTGACTATTATGTGAATTCACAACCTGAGGCAGATGACACCCTTGTAAATGAAGCAGCAGAACGCTTAGCTCTTGAAATGACCCAAAAAACACCCAAGGATTCCTTGTTCCTAATTGACTTGGATGCTTATTGTTCTCTAGATTTGCCAACTGGGGAATCCAAGTGA 1173 0.4305 MQGKKKRMVPSPSETQVKGFQSLVTSAAVTAGGSQCSPDDSENFYTKLTELLESSGLSLIFNVRETMLDLYLFYLEVTRRGGYYQVGRENKWGEVASALKLEGNNAKLSAQVEKLYAHLLYKFEQLYFYRDPAKQAAASSTRDKIFQQLHCMMFLLHFGFGLNMYYLTSKGSFLFSIPSPFFKGTQRGKRNSTTSLSQLQLMDNEDGQKVTKICEDCACPMTGAGYVEQPVLLPAPSNDKQMKKRRGAPQGQRNAYQIFLKQECARLKTCSQVPDGPRILRMAVDAWKKMSVIEKQPYVEESKKSKEKFKEAMITYNKQQKMQDIKEGKRPSPCGGDYYVNSQPEADDTLVNEAAERLALEMTQKTPKDSLFLIDLDAYCSLDLPTGESK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01948 390 Gene3D High mobility group box domain 235 332 IPR036910 -
Rops6g01948 390 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 40 325 - -
Rops6g01948 390 SMART hmgende2 248 318 IPR009071 -
Rops6g01948 390 CDD HMG-box_SF 253 299 - -
Rops6g01948 390 ProSiteProfiles ARID domain profile. 38 128 IPR001606 GO:0003677
Rops6g01948 390 SUPERFAMILY HMG-box 237 324 IPR036910 -
Rops6g01948 390 SMART ARID_2 35 124 - -
Rops6g01948 390 Pfam ARID/BRIGHT DNA binding domain 41 124 IPR001606 GO:0003677
Rops6g01948 390 SMART bright_3 39 129 IPR001606 GO:0003677
Rops6g01948 390 Pfam HMG-box domain 249 317 IPR009071 -
Rops6g01948 390 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 249 317 IPR009071 -
Rops6g01948 390 Gene3D - 27 145 IPR036431 GO:0003677
Rops6g01948 390 SUPERFAMILY ARID-like 38 132 IPR036431 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01948 68 139 ARID Transcription Factor Family AT1G76110 37.838 5.38e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops6g01948 ARID 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01948 - - var:108325455 355.91