Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01947 ATGGAGGTGCTTCCTCGGACAATCATTCTTCTCCCTCTTATGTTGTTAGTCCTCTGTTCCTTCAGTGTTTGCAGAGCAGAGGAGTGTGGTGGCAACAAAATTTCACGTACCATTATCGTAGATCACTCTGGCAAAACAAAATTCAGAACGGTTCAAGCTGCCATTGATTCAATTCCAAAAAACAACAATCGATGGGTGAAAGTTCACATAAATGCTGGCACATACACGGAGAAGGTTCATATTCCATATGAAAAGCCATGCATCTTTTTGGAAGGCCAAGGCAGAGAAGTTACCACTATCACATACAATGACCACCAAAGAACAGATACGAGTGCCACCTTCTCTTCGTTTCCAAACAATGTTGTAGCAAAGGGCATTACTTTTAAGAACTCGTTCAATGTTGCGGCGGGGTCGAAAATGGTAGTCCCAGCATTGGCAGCAAGGATATATGGAGACAAATCTGCATTTTATGATTGTAGTTTCATTGGTTATCAAGATACGTTATGGGATGTACAAGGCCGTCACTACTTCAAAAACTGCATTATTCAAGGTGCTGTCGACTTCATATTTGGCAATGGTCAATCCTATTACGAGGATTGCATGCTCAAGGTGAGTTTCCCAGGTTTCATAACAGCACAAGGACGCAATTCAAGGAATGACCCAAGTGGTTTTGTGTTCCGACGGGGTTCTGTGGTTGGCACTGGAAAATCGTTTCTAGGAAGAGCCTATGGTCCTTATTCTAGAGTTATATTTTATGGTACAAATTTTGGTCAAGTGGTTGCCCCTCCAGGATGGAATGCTTGGCATTACACAAAACAGGAGGCTAAATTAACCTTTGCAGAGATTGACTGTAAAGGGGCAGGGACTAATACTTCGAAACGAGTTCCTTGGATGAAGAAGTTCCATGCTTCACAGCTAAATCAATTTTCGCTTTCAGAATTCATCGACCAAGATGGGTGGCTTGCAAAATTACCAACTGAATAA 984 0.4217 MEVLPRTIILLPLMLLVLCSFSVCRAEECGGNKISRTIIVDHSGKTKFRTVQAAIDSIPKNNNRWVKVHINAGTYTEKVHIPYEKPCIFLEGQGREVTTITYNDHQRTDTSATFSSFPNNVVAKGITFKNSFNVAAGSKMVVPALAARIYGDKSAFYDCSFIGYQDTLWDVQGRHYFKNCIIQGAVDFIFGNGQSYYEDCMLKVSFPGFITAQGRNSRNDPSGFVFRRGSVVGTGKSFLGRAYGPYSRVIFYGTNFGQVVAPPGWNAWHYTKQEAKLTFAEIDCKGAGTNTSKRVPWMKKFHASQLNQFSLSEFIDQDGWLAKLPTE* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01947 327 Gene3D - 31 326 IPR012334 -
Rops6g01947 327 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 32 322 - -
Rops6g01947 327 FunFam Pectinesterase 32 325 - -
Rops6g01947 327 Pfam Pectinesterase 38 317 IPR000070 GO:0030599|GO:0042545
Rops6g01947 327 SUPERFAMILY Pectin lyase-like 34 323 IPR011050 -
Rops6g01947 327 ProSitePatterns Pectinesterase signature 2. 182 191 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01947 Rops-Chr6 37293882 37295532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01947 16 274 Carbohydrate Esterase AT2G19150 49.254 1.15e-85 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01947 - - gmx:100800737 449.514