Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01941 ATGCTTCACTTCACTCCCATAACTCATGAATTGAAAGGAAAACACAGTGGCAAGGCAATCATGTTGACAAGACCCCTGCACCTCTTTTATGCAGACTACAGGGCTTGCTTTGCTCCCGTCATCCACGACCCTACCCTGTCCAATGCCGTGAGGACACCCCTCTCATTTTCACGCTCTCTTCCAATCTGTGAGCACAGGATGGATTTCCAGGGATTCTTAAACGACTTGCAGGATTGGGAACTTTCTGGAAAGGACAAAGCACGAAAAATGAAGTCACCAAAGGAAAATGGTTCATCTTCTCGAAATACTGCATCAGTGGGTATGGAGAAGGCATCAAGAGGAGATACTATTTATTTTGATCATGCGAGAAATTCTTCAGGACAGTATGATTTCCCAAGAGATAACGATCCTTTCAGTCGTGTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATATGGGAAATGAGTTTTTCAAACAAAAGAAGTTTAAGGAAGCTATCGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCTATATCAAGCTCAAAAGATTCCGAGAGGCTGAGGATGACTGTACAGAGGTCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCAAGAAAAGAACTTGGGAAGATTAAAGAATCCATGGACGATGCTGAGTTTGCCTTGAGGCTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGAGAAAGAAATTCTTCAGAAAGCATCTGGAGCTCTGAGAAGCGCTGTACAGGGAACTCAAAAAGTGGGAAAGCCAGAGACAAAAGTTAATGGAGGCAGCATCAACTCCATTTTACATGGTACTCAAAAGTCAGGGCCAGCTAAAGTTCATCATCACACAAAGGATAATGAGTCGCAAATTCCTGCTAAAGAATCACTCTTGATGGAGGAGATTGATAACAGGGATAAAAATGCCAGAAGCAGGACTCAAGGACAAGGGGATGGTTCTAAGGTTGGTTCTAATGCAAGCAACAGTTTGGAGCAGGTTAAGCAGAGAAATCATGGGACTAGAAAGCAGGAAATGAAAGAATCTATTCAACAGCTTGCTTCTCGTGCAGCTTCTCAAGCCATGGCTGAAGCTGCAAAAAACATTACACCACCAACTACAGCTTATCAATTCGAGGTATCTTGGAGAGGGTTTTCAGGTGATCTTACTTTACAGGCTCGTCTGTTAAAGGTCATACCTCCCCATGAATTACCAAAAATATTAAAAAATGCCTTATCTTCTACCCTGCTAATTGAGATCGTCAAGTGCCTTGCGTCCTTTTTCACGGAAGATATGGATCTGGTTATTAGTTATATGGAGAATTTGACCAAGGTATCGAGATTTGACATGATCATAATGTGCCTTTCATCAACAGATAAGGATGACTTACGCAAGATCTGGACTGAAGTGTTCTGTAGTGAGGCAACTCCAATGGAGTACGCAGAGATTCTGGACAACCTTGGATCAAAATTCTGCCTTGCACAGTGA 1593 0.4231 MLHFTPITHELKGKHSGKAIMLTRPLHLFYADYRACFAPVIHDPTLSNAVRTPLSFSRSLPICEHRMDFQGFLNDLQDWELSGKDKARKMKSPKENGSSSRNTASVGMEKASRGDTIYFDHARNSSGQYDFPRDNDPFSRVHSSFVPEDVPDAASEKDMGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYIKLKRFREAEDDCTEVLNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKKQYADAKSLYEKEILQKASGALRSAVQGTQKVGKPETKVNGGSINSILHGTQKSGPAKVHHHTKDNESQIPAKESLLMEEIDNRDKNARSRTQGQGDGSKVGSNASNSLEQVKQRNHGTRKQEMKESIQQLASRAASQAMAEAAKNITPPTTAYQFEVSWRGFSGDLTLQARLLKVIPPHELPKILKNALSSTLLIEIVKCLASFFTEDMDLVISYMENLTKVSRFDMIIMCLSSTDKDDLRKIWTEVFCSEATPMEYAEILDNLGSKFCLAQ* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01941 530 MobiDBLite consensus disorder prediction 343 384 - -
Rops6g01941 530 ProSiteProfiles TPR repeat profile. 153 186 IPR019734 GO:0005515
Rops6g01941 530 MobiDBLite consensus disorder prediction 281 331 - -
Rops6g01941 530 Pfam Potential Monad-binding region of RPAP3 406 495 IPR025986 -
Rops6g01941 530 MobiDBLite consensus disorder prediction 281 309 - -
Rops6g01941 530 SMART tpr_5 153 186 IPR019734 GO:0005515
Rops6g01941 530 SMART tpr_5 220 253 IPR019734 GO:0005515
Rops6g01941 530 SMART tpr_5 187 219 IPR019734 GO:0005515
Rops6g01941 530 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Rops6g01941 530 MobiDBLite consensus disorder prediction 85 108 - -
Rops6g01941 530 PANTHER OS05G0129900 PROTEIN 63 529 - -
Rops6g01941 530 Gene3D Tetratricopeptide repeat domain 145 251 IPR011990 GO:0005515
Rops6g01941 530 Pfam Tetratricopeptide repeat 157 185 IPR001440 GO:0005515
Rops6g01941 530 MobiDBLite consensus disorder prediction 349 370 - -
Rops6g01941 530 Pfam Tetratricopeptide repeat 188 216 IPR019734 GO:0005515
Rops6g01941 530 SUPERFAMILY TPR-like 149 265 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01941 157 223 U-box Gene Family AT3G07370 41.176 3.24e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01941 K23002 - gmx:100784528 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01941 6 37264875 37272398 Rops6g01941 6 37264875 37272398 ECH