Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01938 ATGGAAGATATTTACAGGTTGAACCCTCTTCTATCTTGTCCAGAGGATCTTCATAGAGTAGGTGGCAACGTTAATGTTTCTGCTGCTGCTACTTCTGAATTGCATCTAGGACTGGTGGCTAATAACTACCTTCAGACGGAAGAATCCGAAAGGGATATAACCGGGTCAGATCGGCTGATTAAGAACCAGATCGCCAGTCACCCTCTTTATCCAAATCTAGTATCTGCTTATATAGAATGCCAGAAGGTTGGAGCACCGACAGAACTGGCGTCCCTCCTTGAAGAAATAGGCCGTGAAAGCCACCTCACTGTTGCTCTCCGTGAGATTGGAGATGATCCTGAGCTTGACGAGTTCATGGAATCATATTGCGAAGTTCTTCACAGATATAAACAGGAGTTGTCCAAGCCCTTCAACGAAGCTACCTTGTTTTTGTGTAATATTGAATCACAACTGAGCGACCTTTGTAAGGGCACTCTAACAATGTCCACGGATTACAACCGCTCAGATGAGGCAGCTGGGACTTCGGAGGATGAATTAAGTTGTGGGAAGGTTGAAGCTGTTGAGGGCTATGAATCTTCTGGCACATGTCCAGGTGATAAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTTAAGAAAAGGAAAAAAGGTAAGCTACCAAAGGATGCAAGGAAAACACTGATGGACTGGTGGAACATCCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAATTGCAGCTATCAGAAATGACTGGACTTGATCAAAAGCAGATTAATAATTGGTTCATCAATCAGAGGAAACGCCATTGGAAACCATCTGAAGATATGCGATTTGCCATTATGGAGGGTGTAAGTGGCAGCATAGGAGGACCTATGTAA 915 0.4393 MEDIYRLNPLLSCPEDLHRVGGNVNVSAAATSELHLGLVANNYLQTEESERDITGSDRLIKNQIASHPLYPNLVSAYIECQKVGAPTELASLLEEIGRESHLTVALREIGDDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCNIESQLSDLCKGTLTMSTDYNRSDEAAGTSEDELSCGKVEAVEGYESSGTCPGDKELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARKTLMDWWNIHYRWPYPTEEEKLQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMEGVSGSIGGPM* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01938 304 Gene3D - 219 292 - -
Rops6g01938 304 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Rops6g01938 304 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Rops6g01938 304 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Rops6g01938 304 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 65 291 - -
Rops6g01938 304 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Rops6g01938 304 SMART ELK_2 201 222 IPR005539 GO:0003677
Rops6g01938 304 CDD homeodomain 233 285 IPR001356 GO:0003677
Rops6g01938 304 SUPERFAMILY Homeodomain-like 223 293 IPR009057 -
Rops6g01938 304 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Rops6g01938 304 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Rops6g01938 304 SMART HOX_1 223 288 IPR001356 GO:0003677
Rops6g01938 304 Pfam ELK domain 201 222 IPR005539 GO:0003677
Rops6g01938 304 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Rops6g01938 304 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01938 Rops-Chr6 37203985 37209687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01938 59 300 Homeobox Transcription Factor Family AT1G23380 55.242 2.46e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops6g01938 KNOX2 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01938 - - gmx:102660463 466.077