Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01922 ATGGAAATGGGAAGCAGTAGCAGGAAGAAGAAGGAGAAGAAGGAGAAGCGTGATTTGGAGTTAGAGAAAGTTCGATTAATCAGTTTAGCACTCGATTTCGGCTTCGACGAACACTCCGCTAACAAATGCTTGGACCGTCTCATCGCTCTCTACGGCGACGATGGTCGTGATTTCATCACCGTCGAGCACTGCGGCGATGATTTTCTCGCGGCTCTGGCGGAGTCATTGCAAGCCACCGAGGAATGGGAAGATCCACACCAAATGGAATCACAAGCTTGTGGAACTCTCACTCACATGCTTGATGAAAGTGGTGTTGGCACGTGCGGTGGTGATGCTTCTTCTAGATGCTTCGTTGATATTATTGACGATTCGCCTCAACCTCAGAAACACCACACCAAAGTTGTGGAGTTGGGTTCAAGTGACGATGAAGAGGATATTATGGACTTCACTATTTCAAGTGAAAAATCTGTGGATTGCAGAAGTGGCATCACTCAATGCATGGTTTCATCAACTTCCAGCAAAATACAATCCTCCTTTGCATCAAAGGATAAAAACAGTACTCTCACTTATGAAGAATTGCAGGCACTAGATGATATTGAATTGGCAAATGTTGTTATCTTTGGTAATAGGACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCTTTCATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGTTATCAGCTTCCAGCAACCCTTCAACCAGGAGTTACTTTAGTTGTTTCTCCCTTACTTTCACTCATTCAGGATCAGATAATAACACTTAACCTCAAGTTTGGAATACCTGCCACGTTTTTAAATTCTCAACAAACTGCTTCCCAAGCCACAGCTGTCCTCCAAGAACTAAGAAAAGACAAACTGTCATGCAAGCTCTTGTATGTGACACCTGAGAGAGTTGCTGGAAACCAATCATTTCTTGAGATTCTAAAATGCATGCATCGGAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTACCGGGGATTAGGATCTCTTAAGCAAGACTTTCCAGATGTACCTGTCATGGCATTGACTGCCACTGCAACCCACTCAGTTCGTCAGGACATCTTAAATGCTTTAAGAATCCCACATGCCATTGTTCTTGAAAGAAGCTTTGATAGACCGAATTTGAAGTATGAAGTGATTGTTAAGACAAAGGAACCACTGAAGCAGCTTGGACAGTCGCTAATGGATCGTTTCAAGAATCAGTGTGGAATTGTTTACTGCCTATCTAAAAGTGAATGTGTCGAGGTCTCAAAATTTTTGAATGAGAAATGTAAGATTAAGACAGTGTATTACCATGCTGGCTTGGCTGCTCGCCAGAGGGTTGCTGTTCAAAAGAAATGGCATGACGGAGAAGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTGCGCTTTGTAATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGAGCTGGAAGAGATAATCTTCCTGCAGTTTGCATTGCTCTGTACCAGAAGAAGGATTTTAGCAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAAAGTTTTAAGACAGCGATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAACTAAAGGATGAATGCCGGAGACAGACTTTACTCAAACACTTTGGAGAATCTTTTGATAGAAAAGCCTGCAAGTATGGATCTAACCCCTGTGATAACTGTCTCAAGGCTGCATTGTGA 1842 0.4245 MEMGSSSRKKKEKKEKRDLELEKVRLISLALDFGFDEHSANKCLDRLIALYGDDGRDFITVEHCGDDFLAALAESLQATEEWEDPHQMESQACGTLTHMLDESGVGTCGGDASSRCFVDIIDDSPQPQKHHTKVVELGSSDDEEDIMDFTISSEKSVDCRSGITQCMVSSTSSKIQSSFASKDKNSTLTYEELQALDDIELANVVIFGNRTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTLVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKLSCKLLYVTPERVAGNQSFLEILKCMHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQDFPDVPVMALTATATHSVRQDILNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLGQSLMDRFKNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMAQAKKMQQYCELKDECRRQTLLKHFGESFDRKACKYGSNPCDNCLKAAL* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01922 613 Gene3D - 167 403 IPR027417 -
Rops6g01922 613 Pfam DEAD/DEAH box helicase 214 382 IPR011545 GO:0003676|GO:0005524
Rops6g01922 613 Coils Coil 9 29 - -
Rops6g01922 613 Gene3D - 404 612 IPR027417 -
Rops6g01922 613 PANTHER DNA HELICASE RECQ FAMILY MEMBER 192 609 - -
Rops6g01922 613 NCBIfam RecQ family ATP-dependent DNA helicase 206 610 IPR004589 GO:0004386|GO:0006310
Rops6g01922 613 FunFam ATP-dependent DNA helicase 193 403 - -
Rops6g01922 613 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 335 344 IPR002464 -
Rops6g01922 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 418 571 IPR001650 -
Rops6g01922 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 549 IPR027417 -
Rops6g01922 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 220 396 IPR014001 -
Rops6g01922 613 Pfam Helicase conserved C-terminal domain 429 527 IPR001650 -
Rops6g01922 613 CDD DEXHc_RecQ 206 403 - -
Rops6g01922 613 SMART helicmild6 446 528 IPR001650 -
Rops6g01922 613 CDD SF2_C_RecQ 404 537 - -
Rops6g01922 613 SMART ultradead3 208 412 IPR014001 -
Rops6g01922 613 Pfam RecQ zinc-binding 540 609 IPR032284 -
Rops6g01922 613 FunFam ATP-dependent DNA helicase 404 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01922 Rops-Chr6 37045449 37051043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01922 368 526 Eukaryotic Initiation Factors Gene Family AT5G11170 26.829 1.02e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01922 K10899 - gmx:100806070 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01922 6 37045449 37051043 Rops6g01922 6 37045449 37051043 ECH