LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g01917	ATGGGATCAAATAGGCAATCTTGTGAGGAGCATGAGGGTGATGGTAGACGTCATCGAATTCCAATTCAGGAGTCTAAACAGAGACATAGTGATCCAAAACTACCAACTGTTAGTGGCCTTGAAAATATGATTAAAGGGTTGTGGATGAAAGACCTTGATATTATGCACTTGGAACGTTTCGTGCGAAGAGTGGTACGTGAAGAGGTGGAACGTAAAATACAGGATCACCTATATCCAAGAGCAACTGTTCATCAGGATGGCTTATCTAGAGTGACACCTTTTGAGTTGCGTTTCATTAATAAATTGCCTGATACAATTTTCACGCACTCTAACATGATAGCAGAGGATAACAACCCTATTCAAGTTGCTCTTTTTGATGTTAGATCTCAGTCAGTTGTTAATGTTGGTCCCCTCTCATGTATAAAGATAGAGATCTGTGCCCTCAATGGTGAGTTTGGTTTCAATGACAATGAGGATTGGACTGAAGGTGAATTCAACGTCAATATCTTGCGTGAGAGAGATGATAACTCAAGATGGATAAGAAGCAGAAAGTTTAGGTTGGGAGCCAAAGTTGTGCAATCAACTTCCATTGAAGCAAACATTAAGGAAGGTAGAAGTGAACCTTTTGTAGTCAAAGATTACAGAGGAGAGTCGTACAAGAAGCACTATCCTCCTTCCTTGAATGATGATGTTTGGCGTTTGAAGCAAATTGCCAAAGATGGAAAAATCCGCAAGCGGCTATCTCTCCATGGAGTTCACACTGTCAAGGATCTCTTGCGGTTACACACAACAAATCCATCTACATTATATGAGATGGTTGGCAACATTCCAATGAAGTCATGGCTTGCAATTATTGAACACGCTAAGACTTGTGTGATAGATGATGACAATCCTTATTATGTCTACCACACAGCAGAACAACCAATAGGCCTGCTTTTCAATTCCATCTACGTCCTTGTAAGAGTGACATTTGATGGGCAAAATTATTGTTCTCCTGATACTCTCACGCCCAATGAGAAGCATTGGGTGGAAATAGTGAAGCAGCATGCTTACAAAAACGTGAATAATTTCAAATCAATTGATGAGACATCATTGAGCTGCTTAAGACCATTGGCATGTCTAGGTGCAGGGCAGTCTGATGCTACAGATCAAGATCTTCAACAGTTTCATATCTCTACAGTCCAAGAAGGTCATCAAGAAACATGGCCAAATTATGGTCAACCATTCACCTCAACTTCATATACTGATGGAGGAGTACATAATAACCAAATCTATGCTGATCCACTGCCAGACATGAGAGAAATGCCGCTAAACAGTTCAATATATGGTGAATTTTTCTCCGGATTGTGCATTGAAGGGGATAGTTGCTCGCATTTGCCAATAGTGCAAGGTGGTCATTCAACAACAGAGAATGACAGTTCACAGATTCAATTCACATGA	1440	0.4049	MGSNRQSCEEHEGDGRRHRIPIQESKQRHSDPKLPTVSGLENMIKGLWMKDLDIMHLERFVRRVVREEVERKIQDHLYPRATVHQDGLSRVTPFELRFINKLPDTIFTHSNMIAEDNNPIQVALFDVRSQSVVNVGPLSCIKIEICALNGEFGFNDNEDWTEGEFNVNILRERDDNSRWIRSRKFRLGAKVVQSTSIEANIKEGRSEPFVVKDYRGESYKKHYPPSLNDDVWRLKQIAKDGKIRKRLSLHGVHTVKDLLRLHTTNPSTLYEMVGNIPMKSWLAIIEHAKTCVIDDDNPYYVYHTAEQPIGLLFNSIYVLVRVTFDGQNYCSPDTLTPNEKHWVEIVKQHAYKNVNNFKSIDETSLSCLRPLACLGAGQSDATDQDLQQFHISTVQEGHQETWPNYGQPFTSTSYTDGGVHNNQIYADPLPDMREMPLNSSIYGEFFSGLCIEGDSCSHLPIVQGGHSTTENDSSQIQFT*	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g01917	479	PANTHER	OS02G0177800 PROTEIN	175	408	IPR012416	GO:0005516
	Rops6g01917	479	MobiDBLite	consensus disorder prediction	1	36	-	-
	Rops6g01917	479	Pfam	Calmodulin binding protein central domain	226	291	IPR046830	-
	Rops6g01917	479	MobiDBLite	consensus disorder prediction	7	31	-	-
	Rops6g01917	479	Pfam	Calmodulin binding protein C-terminal domain	299	359	IPR046829	-
	Rops6g01917	479	Pfam	Calmodulin binding protein-like N-terminal domain	95	175	IPR046831	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g01917	Rops-Chr6	36982277	36984869	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g01917	54	365	Calmodulin-binding Proteins	AT5G26920	36.127	4.93e-65	214

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g01917	-		-	gmx:100806598	642.114