Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01915 ATGCAACAACTCCTGAAGCATGGACAGTCTACAGCTGTGAAAACACCAAGTGAGGTGTGCATGCAGAGGAGGCAGGCTTCTCTTAGTTCAGAATTGGGTGAAGATTCTGGGAATGGAATTCAAAAGGTTGTAAATCTTGAAGTGCATGGGAAACGGGTAGGAGGAGAAGATGAGGAGTATCAGCTAACCATTGATGGTGTTGATTTAAGTATAGTTTTCATGTACACACCAGTAACAGAAGGAGGTGCCAAAGGAGAACCTCAATATAAATATACAGATTTTGGAAGAAGGTGCCAAATCAGAAAGGGGGAATGGGTTGTTGCAAAGGAAAATGAGTTGGTGGTCCTAATGAGGCAAGCCCAAACCAGTAAGAAATATTCTTGGAGCTGTTCTTGGTACAGGAAAGTGCAGGGAATTATTCACATGGTTGCTGGGTTGGGTTGTGAGCGGACCTTGAAACCTATTCTCAGTTGTGGTGTGAATGTAAATTGCCATAACATCAATGGGTGGACTGCCCTCCATTGGGCTGCACGTTTTGGAAGGAAAAAAATGGTTGGTTCACTTATAGCTTCTGGTGCATCTGCTGAAGCAGTGACAGATCCAAGTGCACAAGATCCAATCGGTAAAATGGCTGCATCAATTACAGCCAGCCATGGGCATAAGGGACCGGTAGGGTATCTTTCAGGGGTAGCTCTAACAAGCCATCTATTGTCGCTTACACTGGAACAGAGTGAGCTACCTAAAAGTTCAGCTGAGATTCAAGCAGATTTAATAGTTAGTAGTGCAAAGATCTCTGAAAATGGAGGTAGTGGTAACTTTTCCTTCTGTTGTCAATGTGGATTCTCTAATTGTGTTTCATGGATGACAGTCAATCAGGAAGACGCTATACGTGATGGTAGGGAATTGATGCTGAAAGATTTTTGGTAA 927 0.4326 MQQLLKHGQSTAVKTPSEVCMQRRQASLSSELGEDSGNGIQKVVNLEVHGKRVGGEDEEYQLTIDGVDLSIVFMYTPVTEGGAKGEPQYKYTDFGRRCQIRKGEWVVAKENELVVLMRQAQTSKKYSWSCSWYRKVQGIIHMVAGLGCERTLKPILSCGVNVNCHNINGWTALHWAARFGRKKMVGSLIASGASAEAVTDPSAQDPIGKMAASITASHGHKGPVGYLSGVALTSHLLSLTLEQSELPKSSAEIQADLIVSSAKISENGGSGNFSFCCQCGFSNCVSWMTVNQEDAIRDGRELMLKDFW* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01915 308 SMART ANK_2a 168 197 IPR002110 GO:0005515
Rops6g01915 308 Gene3D - 115 231 IPR036770 -
Rops6g01915 308 SUPERFAMILY Ankyrin repeat 139 228 IPR036770 -
Rops6g01915 308 ProSiteProfiles Ankyrin repeat region circular profile. 168 197 - -
Rops6g01915 308 Pfam Ankyrin repeats (many copies) 139 185 IPR002110 GO:0005515
Rops6g01915 308 ProSiteProfiles Ankyrin repeat profile. 168 200 IPR002110 GO:0005515
Rops6g01915 308 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 130 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01915 Rops-Chr6 36976780 36977820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01915 129 272 CAMTA Transcription Factor Family AT1G67310 62.500 7.65e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01915 K21596 - gmx:100791430 197.208