Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01913 ATGTCGTATCGTCCAACCGGCAACTCGAGGACGGAGGTCCGTCGGAATCGATACAAAGTGGCTGTGGATGCGGAAGAAGGTCGGAGACGGCGAGAGGACACCATGGTCGAGATTCGCAAGAACCGTAGAGAAGAGAGTTTGCTGAAAAAGAGGCGCGAGGGTCTCCAACCGAACCAGATACCCACCTCTCTTCCCTCTACTACTTTGGTAGAGAAGAAGTTGGAACAGCTACCGGCTATGGTTGCAGGTGTTTGGAGTGATGATAATAACCTCCAGCTTGAGGCTACCACTCAGTTTCGGAAGCTGCTTTCCATTGAACGTAGTCCACCGATTGAGGAGGTTATACAGGCTGGTGTAGTTTCTCGCTTTGTAGAGTTTCTTATGAGGGAAGACTATCCACAGTTGCAGTTTGAGGCGGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACCAAGGTGGTGATTGATCATGGGGCTGTCCCTATTTTCGTAAAGCTCCTTGCTTCTCCTAGTGATGATGTCCGTGAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCCAGGTGTCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTGAATGAACATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTACCAGTCTTATCCATTCGACTGATGAAGAGGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTAATGCACCAATCTCCTTCTGTGCTGATTCCTGCGCTTCGTACTGTTGGTAATATTGTCACTGGAGATGATATGCAAACTCAGGTTATCATCAACCATCAGGCTCTTCCTTGCCTTTTTAATTTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCCAATCTTATTGGTCCTTTAGTCAACTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCATGGGCTATCTCAAATGCTACATCTGGTGGTTCTCATGAACAAATCAAGTACCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCTGATCCTAGGATCGTTACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTAGGAGAAGCTGATAAAAATATAGGCAACACTGGTGACGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAATCAGGGTTCAACTTTGGTGGCACCGAGGTTCCGGCTGTGCCTTCTGGTGGATTCAACTTTAATTAG 1602 0.4526 MSYRPTGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPNQIPTSLPSTTLVEKKLEQLPAMVAGVWSDDNNLQLEATTQFRKLLSIERSPPIEEVIQAGVVSRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALTSLIHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHQSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLFNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGGTEVPAVPSGGFNFN* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01913 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Rops6g01913 533 FunFam Importin subunit alpha 75 498 - -
Rops6g01913 533 PANTHER IMPORTIN ALPHA 14 503 - -
Rops6g01913 533 PIRSF Importin_alpha 6 532 IPR024931 GO:0005737|GO:0006606|GO:0061608
Rops6g01913 533 Pfam Armadillo/beta-catenin-like repeat 405 442 IPR000225 GO:0005515
Rops6g01913 533 Pfam Armadillo/beta-catenin-like repeat 246 273 IPR000225 GO:0005515
Rops6g01913 533 Pfam Armadillo/beta-catenin-like repeat 192 233 IPR000225 GO:0005515
Rops6g01913 533 Pfam Armadillo/beta-catenin-like repeat 150 189 IPR000225 GO:0005515
Rops6g01913 533 Pfam Armadillo/beta-catenin-like repeat 108 148 IPR000225 GO:0005515
Rops6g01913 533 Pfam Armadillo/beta-catenin-like repeat 277 315 IPR000225 GO:0005515
Rops6g01913 533 Pfam Armadillo/beta-catenin-like repeat 361 400 IPR000225 GO:0005515
Rops6g01913 533 Pfam Armadillo/beta-catenin-like repeat 319 359 IPR000225 GO:0005515
Rops6g01913 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 161 IPR000225 GO:0005515
Rops6g01913 533 SMART arm_5 107 148 IPR000225 GO:0005515
Rops6g01913 533 SMART arm_5 235 274 IPR000225 GO:0005515
Rops6g01913 533 SMART arm_5 404 444 IPR000225 GO:0005515
Rops6g01913 533 SMART arm_5 318 359 IPR000225 GO:0005515
Rops6g01913 533 SMART arm_5 150 190 IPR000225 GO:0005515
Rops6g01913 533 SMART arm_5 191 233 IPR000225 GO:0005515
Rops6g01913 533 SMART arm_5 276 316 IPR000225 GO:0005515
Rops6g01913 533 SMART arm_5 361 401 IPR000225 GO:0005515
Rops6g01913 533 Pfam Atypical Arm repeat 459 505 IPR032413 -
Rops6g01913 533 Gene3D - 75 498 IPR011989 -
Rops6g01913 533 FunFam Importin subunit alpha 13 52 - -
Rops6g01913 533 SUPERFAMILY ARM repeat 10 502 IPR016024 -
Rops6g01913 533 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Rops6g01913 533 Pfam Importin beta binding domain 14 97 IPR002652 GO:0006606|GO:0061608
Rops6g01913 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 287 IPR000225 GO:0005515
Rops6g01913 533 Gene3D - 12 52 IPR036975 GO:0006606
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01913 Rops-Chr6 36973218 36981649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01913 133 393 U-box Gene Family AT3G46510 24.904 4.59e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01913 K15042 - gmx:100789135 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01913 6 36973218 36981649 Rops6g01913 6 36973218 36981649 ECH
Rops8g03925 8 80381118 80386072 Rops6g01913 6 36973218 36981649 ECH
Rops6g01913 6 36973218 36981649 Rops8g03925 8 80381118 80386072 ECH
Rops8g03925 8 80381118 80386072 Rops6g01913 6 36973218 36981649 PCT