Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01911 ATGGCGACGAGGAATCGTACTTTGCTTTTCCGAAAGCACAGAGATGCATTGAAGACAGTTAGGGTTCCGTCCACCACTTCCGGCGGTGGCGGTGGCGGTGGCCCCGTCATCGAAATGGTCAGCACCTCGCTTCTCAATCCGAATCGCTCTTACGCTCCGCTTAGTACCGAGGATCCTGGTAATTCAAGTAAGGGTCTAAATCCAATTACTGTGGGGCTACCTCCAGCGTGGGTGGATGTATCTGAAGAAATATCAGTAAATGTGCAACGTGCACGCACTAAAATGGCAGAGTTGGCCAAGGCTCATGCAAAGGCTTTGATGCCATCATTTGGAGATGGTAAGGAGGATCAACGAGCTATTGAGTCTCTAACACATGAGATAACTGACTTAATCAAGAAGTCGGAGAAGAGACTGCGGCGACTTTCTGCTGCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTGCTCTTGCTACTGATCTTCAGAACCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGGCTGCAAAAAGAGGGTCAAGATGGGGTTGATCTAGAGATCAACTTAAATGGAAGTAGATCCAGATTTGAAGATGACGACTTGGATAATATGGTATTTAATGAGCATCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAGAGAGATCGAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTTATAGACCAGGGAACTATTGTTGATAGAATAGACTACAACATTCAGAATGTTGCCACCACAGTTGAGGATGGACTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTCATGTGTGCTACAGTTCTTGTTATCATGTGCTTCGTGATGTTGGTTCTCTTAATCATCAAGGAAATTATTTTGTAA 972 0.4496 MATRNRTLLFRKHRDALKTVRVPSTTSGGGGGGGPVIEMVSTSLLNPNRSYAPLSTEDPGNSSKGLNPITVGLPPAWVDVSEEISVNVQRARTKMAELAKAHAKALMPSFGDGKEDQRAIESLTHEITDLIKKSEKRLRRLSAAGPSEDSNVRKNVQRALATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGSRSRFEDDDLDNMVFNEHQMAKLKKSEAFTVEREREIEQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLIIKEIIL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01911 323 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Rops6g01911 323 SMART tSNARE_6 222 289 IPR000727 -
Rops6g01911 323 SUPERFAMILY t-snare proteins 73 282 IPR010989 GO:0016020|GO:0016192
Rops6g01911 323 CDD SNARE_syntaxin16 232 288 - -
Rops6g01911 323 ProSitePatterns Syntaxin / epimorphin family signature. 233 272 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops6g01911 323 SMART SynN_4 68 183 IPR006011 GO:0016020
Rops6g01911 323 Gene3D - 74 281 - -
Rops6g01911 323 FunFam Syntaxin-43 74 281 - -
Rops6g01911 323 PANTHER SYNTAXIN 81 308 IPR045242 -
Rops6g01911 323 Pfam SNARE domain 263 315 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01911 Rops-Chr6 36963027 36967436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01911 1 312 SNARE and Associated Proteins AT3G05710 77.469 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01911 K08489 - gmx:100796741 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01911 6 36963027 36967436 Rops6g01911 6 36963027 36967436 ECH
Rops8g03713 8 77491829 77496369 Rops6g01911 6 36963027 36967436 ECH