Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01908 ATGGCAAGGGGAGGAAAGGTTGGTGGCAAACGCAATTTTAGAAAAAAGGTTAGGTCAAAGGAGGGTAGTTCTTCTGATGATTCGGATGAGGACTATGTGGTGTCAGATGAAGGCAGAGATGTTTCTGACTATTACTGCTCCTCGTTAGATGGATGTGCATCAGAGGAGAGTTTTGATAGTTTTATGAAGGATGAGGATGAGGAATTTCAAGTTGTGAGGAATTCCAAGAGATCCAAGGCGAAAAATGGTATGCGTGGTAGGCAGAAAAATGCAAGTAAAAACTCACGAAAGAGGGGAAGGATTACATATGTAGAACAAGAAGAAGAGGAGGAGGAGGAAATTCAAGGAATAAGGACTTTCAATGGACCAAAGGTCCAAAATGGTGTTTGTGGTAAGCCGAAAAATGCAAGTAAAACCTCACGAAAGAGGGGAAGGATGACACATGCAGAACAACTAGAAGAAGAGGAGGAGTGGGAGGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGAAGGAGCAGGAAGAGGAGGTGGAGAGAGACATAGATGAGGAAGAGGAAGAGTATGAGGAAGAGGAGGGGGATGGAGATGAAGAGGATGAGGATTTTGAATATGATGATGAGGATGATGAATTTACACCAGAGGAAGAAGAATATTCAGATGAGGAAGAAGAAATCAGTGGGAGAAAGAAGAAAAATAATGGCATTAAAATGGGCAAGAAGATTTTACAGAAAAGGGCCTCGGCAGTTTCTACCAGAGGTCGAAAAAGGCGAAGATCTAGAGCATCAAAGAAGCCCTTGAGAAACAGAAGAAGAAAGAATGGGGGGTTAAGGAGGAAAGTAAGACGTGACAATGAAGATGATTTTATGGATAATGGCCCAGCCACCAGGACAACAAGTAGGAAAAAACTGGGCCGGAAGAGGAGAAGGCTGATTCTTTCAGATTCAGATGGTGCGTCTTCTGGATCATCTGATTTTGAGTATACCATATCCGAAGAAGAGAGAGAACAGATGAGAGAAGCCCAGGAATCGTGTGTAAGCTTGAGAAATAACTTGAGGAGTTCATCCCTTCAAATAAACAATGAAGAGGCTGGTGTCCATGAAGATCAACATCAGCAACAGAAGCCTCCTGGTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAGGTGAGGTGGGAAAGCAGGTTTGCGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTATTTTTGTTTCGCTTGCATTATGGAGTGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAATACAATCAGCAAGCCTGCACGATCAACAACAGGGATTGATTTAAGAGAAGCGGTTATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCTTATGAGTATGTTATTTGTACAGAGTGTCATCAAGGTGGAGATGATGGTCTCATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTAGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAGGCTGATCCAAGGGTGACAATCCAGAGCCTGCCTGTTAGACCATCCCCTCTACTACATGTACGAGAAAGTATAGACCTCAACTTGATTTCTTCACCCCGCGCAACTTTTAATCAAGGATTTGGTCATCTTTCATCTTCTAGATTTACTGGCAGAATTGGTGAAGGAACTTCTCCAGTTTCTGGAGGGGCACCAACTTTGTCAGAGAGACGTTGGATACATCGTCAAATTCAACAACTACTTTCAATAGATAGGATGACTTCTACAACTGGCAGAACTAATGGTATTTCTGCTATCAGTTCAACTAGTAACTTATATAGCTCTCCAATTGATCAAAGTAGGGAAACAGCCACTCAACAGACAATGACACAGGAAGTGGGAACATCATACCACACATTTTTTGAAGAGAGATTATGCAACAATATTTCTCCATTAATGCAGAATAGGGTATCATGGCCTGGACTTGTGGGGACACCCCCAGTTCCAGATTATGAACAAGTCCATCAGTTCAGCAGGTCAAACATTGTCGCTGATTGCAGCTCGTCCCCTGCTGTCAGAGAAGAGAGTAACTTTCACATTGCGAAGGAGCAGTTGCAGGCAATGGTTAAAAGCCACCTTAGGAGTCTGTCTCAAAGTATTGATTTAGGACTTTTTGACACAATCGGGACTCAAACACATAAAGTGGGGCCTCCCCCCACCTTTAGAGACATGGTACATGACTCTCAAACCACAAGGCCAGGATCATTACAAAAAATCAGGACAGGCTTTCCTGTCATGTTAAGAGAACCTTATCAAGGCCACAATACTTTCAAGGACATTGCAAGGAGTTCAATGCACACCATACTAGCAGCTTGTGGTCTTGAGCACAATAAGAGTGAGGAGATGTGGTGA 2559 0.4334 MARGGKVGGKRNFRKKVRSKEGSSSDDSDEDYVVSDEGRDVSDYYCSSLDGCASEESFDSFMKDEDEEFQVVRNSKRSKAKNGMRGRQKNASKNSRKRGRITYVEQEEEEEEEIQGIRTFNGPKVQNGVCGKPKNASKTSRKRGRMTHAEQLEEEEEWEEEEEEKEKEEKEQEEEVERDIDEEEEEYEEEEGDGDEEDEDFEYDDEDDEFTPEEEEYSDEEEEISGRKKKNNGIKMGKKILQKRASAVSTRGRKRRRSRASKKPLRNRRRKNGGLRRKVRRDNEDDFMDNGPATRTTSRKKLGRKRRRLILSDSDGASSGSSDFEYTISEEEREQMREAQESCVSLRNNLRSSSLQINNEEAGVHEDQHQQQKPPGRKGKEKIEEPQGRKGKEKVEDLKGEVGKQVCGICLSEENKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFNTISKPARSTTGIDLREAVIQVPERDQVYQPSEEELRSYIDPYEYVICTECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEADPRVTIQSLPVRPSPLLHVRESIDLNLISSPRATFNQGFGHLSSSRFTGRIGEGTSPVSGGAPTLSERRWIHRQIQQLLSIDRMTSTTGRTNGISAISSTSNLYSSPIDQSRETATQQTMTQEVGTSYHTFFEERLCNNISPLMQNRVSWPGLVGTPPVPDYEQVHQFSRSNIVADCSSSPAVREESNFHIAKEQLQAMVKSHLRSLSQSIDLGLFDTIGTQTHKVGPPPTFRDMVHDSQTTRPGSLQKIRTGFPVMLREPYQGHNTFKDIARSSMHTILAACGLEHNKSEEMW* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01908 852 SMART ring_2 407 448 IPR001841 -
Rops6g01908 852 MobiDBLite consensus disorder prediction 362 395 - -
Rops6g01908 852 ProSiteProfiles Zinc finger PHD-type profile. 497 546 IPR019787 -
Rops6g01908 852 Pfam Ring finger domain 406 449 IPR001841 -
Rops6g01908 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 547 IPR013083 -
Rops6g01908 852 Pfam PHD-finger 499 545 IPR019787 -
Rops6g01908 852 MobiDBLite consensus disorder prediction 153 221 - -
Rops6g01908 852 MobiDBLite consensus disorder prediction 248 276 - -
Rops6g01908 852 MobiDBLite consensus disorder prediction 361 395 - -
Rops6g01908 852 CDD RING-HC_Topors 405 452 - -
Rops6g01908 852 MobiDBLite consensus disorder prediction 69 325 - -
Rops6g01908 852 SUPERFAMILY RING/U-box 406 455 - -
Rops6g01908 852 MobiDBLite consensus disorder prediction 1 36 - -
Rops6g01908 852 MobiDBLite consensus disorder prediction 78 96 - -
Rops6g01908 852 Coils Coil 146 200 - -
Rops6g01908 852 ProSiteProfiles Zinc finger RING-type profile. 407 449 IPR001841 -
Rops6g01908 852 ProSitePatterns Zinc finger RING-type signature. 426 435 IPR017907 -
Rops6g01908 852 Coils Coil 329 349 - -
Rops6g01908 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 470 IPR013083 -
Rops6g01908 852 PANTHER F18C1.6 PROTEIN 136 772 - -
Rops6g01908 852 SMART PHD_3 499 544 IPR001965 -
Rops6g01908 852 SUPERFAMILY FYVE/PHD zinc finger 471 545 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01908 Rops-Chr6 36954529 36958350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01908 407 454 C3H Transcription Factor Family AT2G39100 41.667 9.72e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops6g01908 PHD 6.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01908 - - gmx:100791422 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01908 6 36954529 36958350 Rops6g01908 6 36954529 36958350 ECH