Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops6g01908 | ATGGCAAGGGGAGGAAAGGTTGGTGGCAAACGCAATTTTAGAAAAAAGGTTAGGTCAAAGGAGGGTAGTTCTTCTGATGATTCGGATGAGGACTATGTGGTGTCAGATGAAGGCAGAGATGTTTCTGACTATTACTGCTCCTCGTTAGATGGATGTGCATCAGAGGAGAGTTTTGATAGTTTTATGAAGGATGAGGATGAGGAATTTCAAGTTGTGAGGAATTCCAAGAGATCCAAGGCGAAAAATGGTATGCGTGGTAGGCAGAAAAATGCAAGTAAAAACTCACGAAAGAGGGGAAGGATTACATATGTAGAACAAGAAGAAGAGGAGGAGGAGGAAATTCAAGGAATAAGGACTTTCAATGGACCAAAGGTCCAAAATGGTGTTTGTGGTAAGCCGAAAAATGCAAGTAAAACCTCACGAAAGAGGGGAAGGATGACACATGCAGAACAACTAGAAGAAGAGGAGGAGTGGGAGGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGAAGGAGCAGGAAGAGGAGGTGGAGAGAGACATAGATGAGGAAGAGGAAGAGTATGAGGAAGAGGAGGGGGATGGAGATGAAGAGGATGAGGATTTTGAATATGATGATGAGGATGATGAATTTACACCAGAGGAAGAAGAATATTCAGATGAGGAAGAAGAAATCAGTGGGAGAAAGAAGAAAAATAATGGCATTAAAATGGGCAAGAAGATTTTACAGAAAAGGGCCTCGGCAGTTTCTACCAGAGGTCGAAAAAGGCGAAGATCTAGAGCATCAAAGAAGCCCTTGAGAAACAGAAGAAGAAAGAATGGGGGGTTAAGGAGGAAAGTAAGACGTGACAATGAAGATGATTTTATGGATAATGGCCCAGCCACCAGGACAACAAGTAGGAAAAAACTGGGCCGGAAGAGGAGAAGGCTGATTCTTTCAGATTCAGATGGTGCGTCTTCTGGATCATCTGATTTTGAGTATACCATATCCGAAGAAGAGAGAGAACAGATGAGAGAAGCCCAGGAATCGTGTGTAAGCTTGAGAAATAACTTGAGGAGTTCATCCCTTCAAATAAACAATGAAGAGGCTGGTGTCCATGAAGATCAACATCAGCAACAGAAGCCTCCTGGTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAGGTGAGGTGGGAAAGCAGGTTTGCGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTATTTTTGTTTCGCTTGCATTATGGAGTGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAATACAATCAGCAAGCCTGCACGATCAACAACAGGGATTGATTTAAGAGAAGCGGTTATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCTTATGAGTATGTTATTTGTACAGAGTGTCATCAAGGTGGAGATGATGGTCTCATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTAGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAGGCTGATCCAAGGGTGACAATCCAGAGCCTGCCTGTTAGACCATCCCCTCTACTACATGTACGAGAAAGTATAGACCTCAACTTGATTTCTTCACCCCGCGCAACTTTTAATCAAGGATTTGGTCATCTTTCATCTTCTAGATTTACTGGCAGAATTGGTGAAGGAACTTCTCCAGTTTCTGGAGGGGCACCAACTTTGTCAGAGAGACGTTGGATACATCGTCAAATTCAACAACTACTTTCAATAGATAGGATGACTTCTACAACTGGCAGAACTAATGGTATTTCTGCTATCAGTTCAACTAGTAACTTATATAGCTCTCCAATTGATCAAAGTAGGGAAACAGCCACTCAACAGACAATGACACAGGAAGTGGGAACATCATACCACACATTTTTTGAAGAGAGATTATGCAACAATATTTCTCCATTAATGCAGAATAGGGTATCATGGCCTGGACTTGTGGGGACACCCCCAGTTCCAGATTATGAACAAGTCCATCAGTTCAGCAGGTCAAACATTGTCGCTGATTGCAGCTCGTCCCCTGCTGTCAGAGAAGAGAGTAACTTTCACATTGCGAAGGAGCAGTTGCAGGCAATGGTTAAAAGCCACCTTAGGAGTCTGTCTCAAAGTATTGATTTAGGACTTTTTGACACAATCGGGACTCAAACACATAAAGTGGGGCCTCCCCCCACCTTTAGAGACATGGTACATGACTCTCAAACCACAAGGCCAGGATCATTACAAAAAATCAGGACAGGCTTTCCTGTCATGTTAAGAGAACCTTATCAAGGCCACAATACTTTCAAGGACATTGCAAGGAGTTCAATGCACACCATACTAGCAGCTTGTGGTCTTGAGCACAATAAGAGTGAGGAGATGTGGTGA | 2559 | 0.4334 | MARGGKVGGKRNFRKKVRSKEGSSSDDSDEDYVVSDEGRDVSDYYCSSLDGCASEESFDSFMKDEDEEFQVVRNSKRSKAKNGMRGRQKNASKNSRKRGRITYVEQEEEEEEEIQGIRTFNGPKVQNGVCGKPKNASKTSRKRGRMTHAEQLEEEEEWEEEEEEKEKEEKEQEEEVERDIDEEEEEYEEEEGDGDEEDEDFEYDDEDDEFTPEEEEYSDEEEEISGRKKKNNGIKMGKKILQKRASAVSTRGRKRRRSRASKKPLRNRRRKNGGLRRKVRRDNEDDFMDNGPATRTTSRKKLGRKRRRLILSDSDGASSGSSDFEYTISEEEREQMREAQESCVSLRNNLRSSSLQINNEEAGVHEDQHQQQKPPGRKGKEKIEEPQGRKGKEKVEDLKGEVGKQVCGICLSEENKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFNTISKPARSTTGIDLREAVIQVPERDQVYQPSEEELRSYIDPYEYVICTECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEADPRVTIQSLPVRPSPLLHVRESIDLNLISSPRATFNQGFGHLSSSRFTGRIGEGTSPVSGGAPTLSERRWIHRQIQQLLSIDRMTSTTGRTNGISAISSTSNLYSSPIDQSRETATQQTMTQEVGTSYHTFFEERLCNNISPLMQNRVSWPGLVGTPPVPDYEQVHQFSRSNIVADCSSSPAVREESNFHIAKEQLQAMVKSHLRSLSQSIDLGLFDTIGTQTHKVGPPPTFRDMVHDSQTTRPGSLQKIRTGFPVMLREPYQGHNTFKDIARSSMHTILAACGLEHNKSEEMW* | 853 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops6g01908 | 852 | SMART | ring_2 | 407 | 448 | IPR001841 | - | |
Rops6g01908 | 852 | MobiDBLite | consensus disorder prediction | 362 | 395 | - | - | |
Rops6g01908 | 852 | ProSiteProfiles | Zinc finger PHD-type profile. | 497 | 546 | IPR019787 | - | |
Rops6g01908 | 852 | Pfam | Ring finger domain | 406 | 449 | IPR001841 | - | |
Rops6g01908 | 852 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 471 | 547 | IPR013083 | - | |
Rops6g01908 | 852 | Pfam | PHD-finger | 499 | 545 | IPR019787 | - | |
Rops6g01908 | 852 | MobiDBLite | consensus disorder prediction | 153 | 221 | - | - | |
Rops6g01908 | 852 | MobiDBLite | consensus disorder prediction | 248 | 276 | - | - | |
Rops6g01908 | 852 | MobiDBLite | consensus disorder prediction | 361 | 395 | - | - | |
Rops6g01908 | 852 | CDD | RING-HC_Topors | 405 | 452 | - | - | |
Rops6g01908 | 852 | MobiDBLite | consensus disorder prediction | 69 | 325 | - | - | |
Rops6g01908 | 852 | SUPERFAMILY | RING/U-box | 406 | 455 | - | - | |
Rops6g01908 | 852 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Rops6g01908 | 852 | MobiDBLite | consensus disorder prediction | 78 | 96 | - | - | |
Rops6g01908 | 852 | Coils | Coil | 146 | 200 | - | - | |
Rops6g01908 | 852 | ProSiteProfiles | Zinc finger RING-type profile. | 407 | 449 | IPR001841 | - | |
Rops6g01908 | 852 | ProSitePatterns | Zinc finger RING-type signature. | 426 | 435 | IPR017907 | - | |
Rops6g01908 | 852 | Coils | Coil | 329 | 349 | - | - | |
Rops6g01908 | 852 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 384 | 470 | IPR013083 | - | |
Rops6g01908 | 852 | PANTHER | F18C1.6 PROTEIN | 136 | 772 | - | - | |
Rops6g01908 | 852 | SMART | PHD_3 | 499 | 544 | IPR001965 | - | |
Rops6g01908 | 852 | SUPERFAMILY | FYVE/PHD zinc finger | 471 | 545 | IPR011011 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops6g01908 | Rops-Chr6 | 36954529 | 36958350 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops6g01908 | 407 | 454 | C3H Transcription Factor Family | AT2G39100 | 41.667 | 9.72e-09 | 55.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Rops6g01908 | PHD | 6.4e-09 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops6g01908 | - | - | gmx:100791422 | 893.649 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops6g01908 | 6 | 36954529 | 36958350 | Rops6g01908 | 6 | 36954529 | 36958350 | ECH |