Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01897 ATGTTCAGATTCTGTACTATATATTCATCAAGGGAAGAGGCACAAGCTGCGTTCAGTGGTGGGAATCATATTGCTGAGGTGATGGGGCATTTTTCTTCTGTGTTCCATGGGTTGGCAAAGTCGTTGAAGAAAGGAAGGAGTTCTGGTACATGTAGCGGGAGAGAAGCCGCAGAAGCAATGGCAAAGGAAGCAAAAAAGAATAACTTCTTACTGCATAGCTCGGGCACTGTTAATGTTGATGGTTCTAACAACTTTGCCTCAGTTTTCTCCAAAAGAGGCAAGAAAGGAGTGAATCAGGATTGCTGCATAGTGTGGGAAGAATTTGGATGCCAAGAGGACATGATCTTCTGCGGGATTTTTGATGGGCACGGGTCATGGGGTCACTTTGTGTCTAGAAGAGTAAGAGAGACAATGCCACCATCTTTGCTATGCAGCTGGCAGGAGACACTTTCTCAGACTTCACTTGATCAAGATATTGATATAGAGACAGAGAAAAGGCAACATCGATTCAATATATGGAAGCATTCATACTTGAAGACTTGTGCTGCCATTGATCAAGAACTAGAGAAGAATCGCAAGATAGATTCCTTTTTCAGCGGAACAACTGCCCTTTCAGTTGTTAGACAGGGTGAACTCATGGTGATAGCAAATGTTGGTGACTCTCGTGCTGTATTAGCTACAACATCAGATGATGGATGTTTGGTATCAGTGCAGCTGACAATAGATTTCAAGCCCAATTTACCTCAGGAAGCAGAGCGAATACTAGAGTGCCAAGGGCGTGTGTTCTGCTTAGATGACGAGCCAGGGGTGCATAGGGTGTGGTTGCCTGATGAGGAGTCTCCAGGACTTGCCATGTCAAGGGCTTTTGGTGATTACTGTGTGAAAGAGTATGGTCTTATTTCAGTGCCTGAGGTAACACAAAGGAATATAACCAGCAGAGACCAGTTTGTTGTGCTAGCCACTGATGGGGTTTGGGATGTAATCTCTAATCAAGAAGCGGTGGATGTTGTGTCTTCAACACCAGACAGAACAAATGCAGCTAAACGTTTGGTGGAGTGTGCAATGCATGCATGGAAATGCAAGAGGCGGGGTATTGCCATGGATGACATTTCAGCTATTTGTCTCTTCTTTCACTCTTCACATTCACCTGAGCAAGTTGCTACCCTAAAATAG 1173 0.445 MFRFCTIYSSREEAQAAFSGGNHIAEVMGHFSSVFHGLAKSLKKGRSSGTCSGREAAEAMAKEAKKNNFLLHSSGTVNVDGSNNFASVFSKRGKKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGSWGHFVSRRVRETMPPSLLCSWQETLSQTSLDQDIDIETEKRQHRFNIWKHSYLKTCAAIDQELEKNRKIDSFFSGTTALSVVRQGELMVIANVGDSRAVLATTSDDGCLVSVQLTIDFKPNLPQEAERILECQGRVFCLDDEPGVHRVWLPDEESPGLAMSRAFGDYCVKEYGLISVPEVTQRNITSRDQFVVLATDGVWDVISNQEAVDVVSSTPDRTNAAKRLVECAMHAWKCKRRGIAMDDISAICLFFHSSHSPEQVATLK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01897 390 SMART PP2C_4 76 375 IPR001932 -
Rops6g01897 390 Pfam Protein phosphatase 2C 107 355 IPR001932 -
Rops6g01897 390 CDD PP2Cc 84 377 IPR001932 -
Rops6g01897 390 FunFam Probable protein phosphatase 2C 34 76 379 - -
Rops6g01897 390 Gene3D - 76 380 IPR036457 -
Rops6g01897 390 PANTHER PROTEIN PHOSPHATASE 63 375 IPR015655 GO:0004722|GO:0006470
Rops6g01897 390 ProSiteProfiles PPM-type phosphatase domain profile. 85 377 IPR001932 -
Rops6g01897 390 SUPERFAMILY PP2C-like 83 378 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01897 Rops-Chr6 36847473 36849526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01897 28 378 PP2C-type Phosphatase Gene Family AT3G05640 70.141 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01897 - - gmx:100793051 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01897 6 36847473 36849526 Rops6g01897 6 36847473 36849526 ECH
Rops8g03936 8 80518508 80527556 Rops6g01897 6 36847473 36849526 PCT
Rops11g03372 11 64837335 64838486 Rops6g01897 6 36847473 36849526 PCT