Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01896 ATGTTGTCTGAGCCGCTAATTCAACGGTCGGGCACAGTGTCCGCGTCCCTGCTATGCTGCGAACCGGCGTTGATTTTCGAGGAGTTGCCCAAAGCCACCATCATGACCGTATCACCACCAGAAACCGGAGACATAAGTCCAATCCTCCTTTCTTATACCATTGAGTTGCAGTACAAACAGTTCAAGTGGCGTCTACGGAAGAAAGCATCACAACTTCTCTATTTACAGTTTGCTTTGCGGAAACGTGCAATAATTGAAGAATTTCATGACAAGCAAGAGCAGGTAAAGGAGTGGCTTCGAAGCTTAGGAATAGTAGATCAAACAGTGGTGGTGCAAGATGATGAAGAACCTGATGATGGAGCTGTACCTTTATATAATGAAGACAGTGTTAAAAACAGATATGTTCCTTCTGTTGCAGCTCTATCAATAATTCGTCCATCGCTAGGAGGGCAGCAGTTAATAGCTGATAGAGCTAAAGTTGCAATGCAGAGTTATTTGAATCTTTTTTTAGAAAATCTGGATATCGTGAATTCTCAAGAGGTCTGCAAGTTTTTGGAGGTATCCAAGCTATCTTTTATACAGGAGTATGGTCCAAAACTGAAAGAGGGATATGTAATGGTGAAGCATTTGTCAAATATTTCACAGGATTCAGATGTAACTTGCCTTCCATGCAATTGGTTTAATTTTTGTGATAACAACTGGGAAAAGGTATGGGCAGTTTTGAAACCTGGATTTTTGGCCTTGCTGGATGATCCCTTCAACAGCAAACCACTGGACATAATTATTTTTGATGTCCTCCCATCCTCAACTGGAAAAGGAGGGACCAAAGTATATTTAGCTGATCCTATAAAGGAACGCAATCCTTTGCATCACACATTTAAGGTTACTAGTGGAAATAGGAGCATATGCTTGAGAACTACCAGCAATGCTAACGTTAACGCTTGGGTTACTGCAATTAATGATGCTGGTCTAAGACCTCTGGAGGGTTGGTGTTGTCCTCATCGCTTTGGTTCATTTGCTCCTGTAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTAGATGGACAGGCAGCATTTGAAGCAATTGCTTCTTCAATTCAACATGCAAAGTCAGAGATCTTCATTACGGGATGGTGGCTGTGCCCAGAGCTATATCTGAGACGGCCTTTTGATGGTTTTTCTACCTTTAGGTTAGACTCATTACTAGAAGAAAAAGCTAAGCAAGGGGTTCAGGTCTATGTGCTTCTCTACAAGGAGGTTTCTTTAGCTTTGAAAATCAACAGCTCGTACAGTATGAGAAGACTGCTGAAAATTCATGAGAATGTGAGGGTATTGCGCTATCCTGACCATTTCGCTTCTCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTGTTGATTACAAGATCTGCTACATTGGAGGACTAGATTTGTGCTTTGGACGATATGACACACCTGAACATAAAGTGGGCGATTGCCCCTCTGTAATGTGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCATGGGAAGACACCATGAGAGATGAATTGGATCGCCAGAAATATCCCCGTATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGACACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACAAGCAATTCCACTACTTATGCCTCATCATCACATGGTCATCCCTCATTACTTGGGAAGAAACAAAGAGATAGACATTGATGGAGAGAAAGATGAAGACAACAGGAAAGAAATTGACAGGCAGGATTCATTTTCCTTAGAGTCTCTAGTGCAAGATATACCATTACTTTTACCTCAAGAAGCTAGTGAACTAGTTACTTCGAGTGATCATACAAATTCTAGTGAAAATTCTCCATTATTATTGTCCAAAAATATGGAACAGAAACCTTTAGTATCAGATACCCAGATGAAAGGGTTTCATGATGAAGTTGATCCTTTTAACTTGGGGGCTCAATCTGTTGTTGATGCTCTAGAAGATTGGTGGGAAACACCAGAAGGTACCAATGATGCCACTACTTTGGAATATGGACAAGTTGGTCCACGTACTACTTGTCACTGTCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAAGTCAGCCTGAAGAAAGCATTCACATTGCATATTGTACTCTTATTGAAAAAGCGAAACATTTTATCTACATTGAGAACCAATTTTTCATATCGGGTCTAGCAAGCGATGACATTATACAGAACCGTATTTTGGAAGCACTATACAGGCGGATTTTGCTGGCCCACAAAGAACAGAAAGATTTTAGAGTTATAATTGTGTTGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCAACTGTGAGAGCCTTAACACATTGGCAGTATAGAACAATTTCTAGAGAAAAGCACTCCATTTTACACAATCTTGAAGCTGTACTTGGTCCTAAGACACATGACTATATTTCTTTCTATGGTCTAAGATCTCATGGTAGACTTTACACGGATGGTCCTATGGCTACAAGTCAGGTATATGTGCACAGTAAATTGATGATAATTGATGACCGTGTAGCTTTTATTGGATCATCTAATATAAATGACCGTAGTTTGCTTGGATTAAGAGACTCTGAGATTGGAGTGCTTATAGAAGACAAAGAATATGTTGAATCATTGATGAATGGAAAGCCATGGAAGGCTGGGAAATTTTCCCATAGCCTCCGCTGCTCCCTATGGTCTGAGCACCTTGGTCTTCAAACTGGAGAGATCAGTAAAATCAGTGATCCAGTGGCAGATTCAACCTACAATGATTTGTGGTCTGCAACTGCAAAGGAAAATACTAGGATATACCATGAGGTCTTCGCTTGCATTCCCAATGATCAGATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTTCACTGGAAGGAAAAACTTGGCCACACCACCATAGATTTGGGAATAATAGCCCCTGATAAGTTAGTCTGTCATGAGAATGGAGAAACCAAAGTAACAGACCCGATTGATAGATTGAAGTCTGTAAAGGGACATCTTGTTTCCTTTCCTTTGGATTTCATGCGTGAGGAAGATCTAAGACCAGCTGTTATTGAGAGCGAGTTTTTTGTATCCCCTCAAGTATATCATTGA 3222 0.4153 MLSEPLIQRSGTVSASLLCCEPALIFEELPKATIMTVSPPETGDISPILLSYTIELQYKQFKWRLRKKASQLLYLQFALRKRAIIEEFHDKQEQVKEWLRSLGIVDQTVVVQDDEEPDDGAVPLYNEDSVKNRYVPSVAALSIIRPSLGGQQLIADRAKVAMQSYLNLFLENLDIVNSQEVCKFLEVSKLSFIQEYGPKLKEGYVMVKHLSNISQDSDVTCLPCNWFNFCDNNWEKVWAVLKPGFLALLDDPFNSKPLDIIIFDVLPSSTGKGGTKVYLADPIKERNPLHHTFKVTSGNRSICLRTTSNANVNAWVTAINDAGLRPLEGWCCPHRFGSFAPVRGLTEDGSQAQWFVDGQAAFEAIASSIQHAKSEIFITGWWLCPELYLRRPFDGFSTFRLDSLLEEKAKQGVQVYVLLYKEVSLALKINSSYSMRRLLKIHENVRVLRYPDHFASRVYLWSHHEKLVIVDYKICYIGGLDLCFGRYDTPEHKVGDCPSVMWPGKDYYNPRESEPNSWEDTMRDELDRQKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEQAIPLLMPHHHMVIPHYLGRNKEIDIDGEKDEDNRKEIDRQDSFSLESLVQDIPLLLPQEASELVTSSDHTNSSENSPLLLSKNMEQKPLVSDTQMKGFHDEVDPFNLGAQSVVDALEDWWETPEGTNDATTLEYGQVGPRTTCHCQVIRSVSQWSAGTSQPEESIHIAYCTLIEKAKHFIYIENQFFISGLASDDIIQNRILEALYRRILLAHKEQKDFRVIIVLPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILHNLEAVLGPKTHDYISFYGLRSHGRLYTDGPMATSQVYVHSKLMIIDDRVAFIGSSNINDRSLLGLRDSEIGVLIEDKEYVESLMNGKPWKAGKFSHSLRCSLWSEHLGLQTGEISKISDPVADSTYNDLWSATAKENTRIYHEVFACIPNDQIHSRAALRQSMVHWKEKLGHTTIDLGIIAPDKLVCHENGETKVTDPIDRLKSVKGHLVSFPLDFMREEDLRPAVIESEFFVSPQVYH* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01896 1073 SUPERFAMILY Phospholipase D/nuclease 706 918 - -
Rops6g01896 1073 PIRSF PLD_euk 585 1073 IPR016555 GO:0004630|GO:0006654|GO:0048017
Rops6g01896 1073 PIRSF PLD_euk 41 594 IPR016555 GO:0004630|GO:0006654|GO:0048017
Rops6g01896 1073 SMART pld_4 868 895 IPR001736 GO:0003824
Rops6g01896 1073 SMART pld_4 459 486 IPR001736 GO:0003824
Rops6g01896 1073 CDD PLDc_vPLD1_2_yPLD_like_1 352 497 - -
Rops6g01896 1073 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 868 895 IPR001736 GO:0003824
Rops6g01896 1073 PANTHER PHOSPHOLIPASE D 158 1057 IPR015679 -
Rops6g01896 1073 Pfam PLD-like domain 741 915 IPR025202 -
Rops6g01896 1073 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 459 486 IPR001736 GO:0003824
Rops6g01896 1073 SMART PH_update 199 326 IPR001849 -
Rops6g01896 1073 Gene3D - 198 322 IPR011993 -
Rops6g01896 1073 Gene3D Endonuclease Chain A 690 931 - -
Rops6g01896 1073 CDD PH_PLD 176 322 - -
Rops6g01896 1073 CDD PLDc_vPLD1_2_yPLD_like_2 728 912 - -
Rops6g01896 1073 FunFam Phospholipase 702 922 - -
Rops6g01896 1073 ProSiteProfiles PH domain profile. 198 324 IPR001849 -
Rops6g01896 1073 Gene3D Endonuclease Chain A 345 580 - -
Rops6g01896 1073 SUPERFAMILY PH domain-like 231 327 - -
Rops6g01896 1073 SUPERFAMILY Phospholipase D/nuclease 318 579 - -
Rops6g01896 1073 Pfam Phospholipase D Active site motif 459 486 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01896 Rops-Chr6 36811802 36824925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01896 25 1073 Phospholipase D Gene Family (Wang group) AT3G05630 65.722 0.0 1394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01896 K01115 - gmx:100796914 1902.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01896 6 36811802 36824925 Rops6g01896 6 36811802 36824925 ECH