Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01891 ATGGCCACTAACTTGAAGACATCGATTATTTTGTACACTCTCGTTTCCCTCTTCATCTTCTTCCTTTCTCCATCTCTTGCAGCTTTCTCCTCCTCATGTGACATTACATCCTACCCAGCTTTCTGCACAACCACTCTGCCTCCTCAGTATTTATCTTCATCCATACAAGACCAAGGCCGTTTCTTCCTTCATCAATCCTTATCAATAACAAAAACGATTCTTGGATTGATCTCTTCTTATCTTAGAAACCAGTTTACCATTCCTTATTCCACCAAACATGCCCTTGAAGATTGTATTAATCTTGCAGAAATGAACATTGATTTCTTGTCTAATGTCCTTCAAGCCATTGAAGAAACTGTGACTAGTTATCAGGCTTATGATTTGCAAACCTTGCTTAGTGCCATTTTAACCAATCAACAAACATGCTTGGATGGTTTTCAAGAGGTAACTCCTTATCCTAGCATTACCAGTGGCTTATCAAGTCCTCTTTCTGATGGGATCAAACTATATAGCATATCGCTGGCACTTTTCACCCACGGTTGGGTTAGCAATACCACAGGAAACTCAACAACAGAGAAAACAGTTGAGATAACTATGAATAGAAAGTTACTGCAGACAAGCATTGACAATGTAGTGGTGAGACAAAAAGTCGTGGTCAACCCTGATGGGTCTGGGGATTTCACCACCATAAATGATGCAGTGGCTGCTGCACCTAACAATACCGGCACCGACAATGGGTACCATGTAATTTATGTTGTTGCTGGGATTTATAATGAGTACGTGTCTATTGCTAAGAGCAAGGAGAACCTAATGATCGTTGGTGATGGCATCAACCGCACTGTGATCACTGGCAATCATAGCGTGGTTGATGGTTGGACCACTTTCCAATCTGCAACTTTTGCTGTAGTTGGAAAAGGGTTTGTTGCAGTGAACATAACAATTCGCAATACTGCGGGGCCAAGCAAGCATCAAGCGGTTGCTATGAGAAACGGGGCAGACATGTCCACGTTCTACAATTGTATTTTTGAAGGCTACCAAGACACACTTTATGCACATTCCCTGAGGCAATTCTACAAGAAATGTGACATTTATGGCACAGTGGATTTTATATTTGGCAATGCAGCAGCAGTGTTCCAGGATTGTAACATATACCCAAGACTTCCTATGCAAAATCAATTCAATGCAATCACAGCACAAGGCCGAACAGATCCTAACCAAAACACTGGTTTCTCCATACAGAACTGTTGCATGATAGCAGCCAGTGATTTGGGTGATGCTACTAACAATTATAATGGCATAAAGACATATCTGGGTCGGCCTTGGAAGGAGTATTCAAGGACAGTTTACATGGAATCTTTCATGGATGGCCTAATTGATCCAAAGGGTTGGATGGAATGGTCAGGGGATTTTGCTTTAAGCACACTGTATTATGCAGAGTATGCTAACTGGGGACCAGGTTCAAACATTAGCAATAGGGTCACATGGCAAGGCTACCATCTCATTGGTGAAAAGGATGCATATAATTTCACGGTGCACAAATTTATAAGTGGTAAGACATGGTTGCCCAAGACAGGAGTGCCTTTCAAAGCTGGGTTGCAGTGA 1602 0.4195 MATNLKTSIILYTLVSLFIFFLSPSLAAFSSSCDITSYPAFCTTTLPPQYLSSSIQDQGRFFLHQSLSITKTILGLISSYLRNQFTIPYSTKHALEDCINLAEMNIDFLSNVLQAIEETVTSYQAYDLQTLLSAILTNQQTCLDGFQEVTPYPSITSGLSSPLSDGIKLYSISLALFTHGWVSNTTGNSTTEKTVEITMNRKLLQTSIDNVVVRQKVVVNPDGSGDFTTINDAVAAAPNNTGTDNGYHVIYVVAGIYNEYVSIAKSKENLMIVGDGINRTVITGNHSVVDGWTTFQSATFAVVGKGFVAVNITIRNTAGPSKHQAVAMRNGADMSTFYNCIFEGYQDTLYAHSLRQFYKKCDIYGTVDFIFGNAAAVFQDCNIYPRLPMQNQFNAITAQGRTDPNQNTGFSIQNCCMIAASDLGDATNNYNGIKTYLGRPWKEYSRTVYMESFMDGLIDPKGWMEWSGDFALSTLYYAEYANWGPGSNISNRVTWQGYHLIGEKDAYNFTVHKFISGKTWLPKTGVPFKAGLQ* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01891 533 CDD PMEI-like_3 31 181 - -
Rops6g01891 533 Gene3D - 210 532 IPR012334 -
Rops6g01891 533 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Rops6g01891 533 PANTHER PECTINESTERASE 18 522 - -
Rops6g01891 533 SUPERFAMILY Pectin lyase-like 215 531 IPR011050 -
Rops6g01891 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 179 IPR035513 -
Rops6g01891 533 FunFam Pectinesterase 210 532 - -
Rops6g01891 533 Pfam Plant invertase/pectin methylesterase inhibitor 30 176 IPR006501 GO:0004857
Rops6g01891 533 Coils Coil 99 119 - -
Rops6g01891 533 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Rops6g01891 533 SMART PMEI_2 24 176 IPR006501 GO:0004857
Rops6g01891 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 179 IPR035513 -
Rops6g01891 533 Pfam Pectinesterase 217 517 IPR000070 GO:0030599|GO:0042545
Rops6g01891 533 NCBIfam pectinesterase inhibitor domain 9 178 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01891 Rops-Chr6 36768837 36770743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01891 14 532 Carbohydrate Esterase AT4G02330 51.408 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01891 K01051 - gmx:100810329 860.907