Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01889 ATGATGGGGGAAGATACCCAGAAGAAGAAGAGAATCGCCTTGATTAGCCTCTCTACCTTTTTGCTAGTGGCTATGGTGGTTGCCATTACATTTAGCGTCATCAATAGTCAGAATGGTTCCAACGATGACAAGGCTCACGTTGCTTCCAATGTAAAAGCAGTTAAAACCCTTTGTCATCCCACAGATTACAAGAAAGAATGCGAGGAAAGCCTAATAGCAGAGGCTGGCAACACCACGGACCTAAGAGAACTCATTAAAATTGCATTCAACGTTACTATTAAGAAAATTGGTAATGGGCTCAAGAAAACCGATTTCTTGCACGAGGTTGAGAAGGACCACAGGGCCAAGATGGCACTTGAAACCTGCAAGCAACTCATGGATCTTTCCATTGAGGAATTCAATAGGTCACTTGAGAGAATAGGCAAGTTTGATCTCAACAATCTCGAAAACATCCTCACCAGTATAAAGGTTTGGCTTAGCGGTGCAATCACATACCAAGAGACTTGCTTGGATGGTTTCAAGAACACAACTAGCGATGCTGGTAAGAAGATGAAGGAAATTTTAACGAAAGGCATGCACATGAGCAGCAATGCCCTTGTCATCATCTCAGAACTGGAAAAAACTATATCGGATATGACTGTGACAAGAGATGGTCGTCGCCTCCTTCAGGATTCTTCTGTGAATGAACAAGTTGTTGGTCACGATGACAATGAGCTTCCCTCTTGGGCTGATGATGGTGTTGGTGTTCGTAGATTCCTTCATGAGAGTCCACACAAATCCAAGCCCAATGTGGTTGTAGCCAAAGATGGCAGCGGACAGTTCAAGAGTATCAATGAGGCATTGAAGCAGGTGCCCAAGAAGAACAAAAAGCCATTCGTGATTTACATCAAGGAGGGCGTTTATCACGAGTATGTTGAAGTTACCAAGAAAATGTCCCACGTGGTGTTTGTCGGTGATGGTGGCAATAAGACACGAATCACCGGCAACAAAAACTTCATAGATGGGGTTGACACTTACAGAACCTGCTCAATTGCTATTCAGGGAGACTACTTTGTCGCAATCAACATGGGGTTTGAGAATTCGGCTGGCCCCGAGAAACATCAAGCAGTAGCAATAAGGGTCGAAGCAGACAAGACCATCTTTTATAATTGCTCAATGGATGGGTATCAAGACACATTATATGCCCATGCTATGCGTCAATTCTATCGGGATTGCACAATTTCAGGCACCATTGACTTCACCTTTGGTGATGCAGTGGTTGTTTTTCAAAACTGTACTTTTGTGGTTAGAAAGCCTTTGGAAAACCAACAATGCATTGTGACAGCACAAGGCAGACAGGATTGGCACCAACCATCAGGGATGGTCATTCAAGGGGGCTCCATTGTGTCTGACCACACAGTGAAGCTCGAGGACAAGGCTTACTTAGCCCGTCCATGGAAGAATTACTCAAGGACCATCTTCATGGACACCTACATTGGGGACTTGATCCAACCTGATGGGTATATGCCATGGCAAGGACCAGAGGGTCATTCTAGTATCAACACTTGCTTCTATGCTGAGTACAACAACACCGGCCCTGGTTCAAATAAATCAAAGCGTGTAAAATGGCGTGGAATCAAGACCCTTACATCGCAATCCGTTGGTCAATTCTCACCATCTAAATTCTTTCATGGAGATGATTGGATCAGGGTTACTAGGATTCCTTACTCCCCTACCGTGACTTACCCCAAGCACTAA 1737 0.4444 MMGEDTQKKKRIALISLSTFLLVAMVVAITFSVINSQNGSNDDKAHVASNVKAVKTLCHPTDYKKECEESLIAEAGNTTDLRELIKIAFNVTIKKIGNGLKKTDFLHEVEKDHRAKMALETCKQLMDLSIEEFNRSLERIGKFDLNNLENILTSIKVWLSGAITYQETCLDGFKNTTSDAGKKMKEILTKGMHMSSNALVIISELEKTISDMTVTRDGRRLLQDSSVNEQVVGHDDNELPSWADDGVGVRRFLHESPHKSKPNVVVAKDGSGQFKSINEALKQVPKKNKKPFVIYIKEGVYHEYVEVTKKMSHVVFVGDGGNKTRITGNKNFIDGVDTYRTCSIAIQGDYFVAINMGFENSAGPEKHQAVAIRVEADKTIFYNCSMDGYQDTLYAHAMRQFYRDCTISGTIDFTFGDAVVVFQNCTFVVRKPLENQQCIVTAQGRQDWHQPSGMVIQGGSIVSDHTVKLEDKAYLARPWKNYSRTIFMDTYIGDLIQPDGYMPWQGPEGHSSINTCFYAEYNNTGPGSNKSKRVKWRGIKTLTSQSVGQFSPSKFFHGDDWIRVTRIPYSPTVTYPKH* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01889 578 FunFam Pectinesterase 50 206 - -
Rops6g01889 578 Pfam Pectinesterase 263 559 IPR000070 GO:0030599|GO:0042545
Rops6g01889 578 NCBIfam pectinesterase inhibitor domain 21 205 IPR006501 GO:0004857
Rops6g01889 578 SUPERFAMILY Pectin lyase-like 260 572 IPR011050 -
Rops6g01889 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 205 IPR035513 -
Rops6g01889 578 SMART PMEI_2 49 201 IPR006501 GO:0004857
Rops6g01889 578 CDD PMEI-like_3 56 207 - -
Rops6g01889 578 Gene3D - 257 573 IPR012334 -
Rops6g01889 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 207 IPR035513 -
Rops6g01889 578 PANTHER PECTINESTERASE 19 563 - -
Rops6g01889 578 FunFam Pectinesterase 257 573 - -
Rops6g01889 578 Pfam Plant invertase/pectin methylesterase inhibitor 53 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01889 Rops-Chr6 36764889 36767652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01889 4 570 Carbohydrate Esterase AT3G05610 49.652 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01889 K01051 - gmx:100794799 905.205