Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01888 ATGGAAAACCAGCAATGCATTGTGATAGCACAAGGAAGGAAAGAAAGGAAACAACCATCAGCAATAGTCATCCAAGGGGGCTCCATAGTGTCCGACCCTAAGTTCTATGCAATGAGGTTCGAGCATAAATCCTACCTAGCTCGTCCATGGAAGAATTTCTCCAGGACTGTCATCATGGACACCTATGTTGATGATTTGATTCATCCTGATGGTTATTTTCCATGGCAAGGACTAGAAGGCCCTTCTGGCATGGACACTTGCTTCTATGCTAAGTACCATAACACAAGTCCCGGTTTAGACAAATCAAAGCGTGTAAATTGGGCTAGGATCTGGAACCTTAATTCAAAAGCTGCACATTGGTTCTCACCCTCCAAGTTCTTTCATGGTTCTGATTGGATTGAGGTTACTGGGATTCCTTACTTCCCTGGGGTTCCTGACCACCACAGGCACAAAATGACAATACTTAATTGGTGA 474 0.4409 MENQQCIVIAQGRKERKQPSAIVIQGGSIVSDPKFYAMRFEHKSYLARPWKNFSRTVIMDTYVDDLIHPDGYFPWQGLEGPSGMDTCFYAKYHNTSPGLDKSKRVNWARIWNLNSKAAHWFSPSKFFHGSDWIEVTGIPYFPGVPDHHRHKMTILNW* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01888 157 Pfam Pectinesterase 1 129 IPR000070 GO:0030599|GO:0042545
Rops6g01888 157 SUPERFAMILY Pectin lyase-like 2 143 IPR011050 -
Rops6g01888 157 PANTHER PECTINESTERASE 1 134 - -
Rops6g01888 157 Gene3D - 1 145 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01888 Rops-Chr6 36759708 36760181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01888 1 140 Carbohydrate Esterase AT5G49180 39.286 5.31e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01888 K01051 - gmx:100820023 296.975