Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01887 ATGATGCTGCCGAGACAGTGGCAATCCTCCGTCAAGTTCCCTCCAGACTCAGAGAACGTGTCCCTGAGGCTTAGCGTGGAATGTAGATGATACGGTGGCTCCGGTGATCTTGGGTTGCTGTGCCGTGGTTTTAAGCACGCTGGTGTGATGTATGATGGAGTTCCTCAACTCAAGATGTCTGGGGCAGATCCACAGAAGGGAAAGAGAATCGCCATCATTGGCGTATCTGGCCTATTGTTAGTGGCTATGGTCGTTGCCGTCACAGTTGGCGTCAACAGCAGTCAAAATGGTTTTGACGATGATCTAGAAGATAACAGGAAGAACCACGTGACTTCCACATTAAAAGCAGTTCAAACCCTTTGCCATCCCACTGATTACAAAAAGGAATGTGAGGAAAGCCTTATAGCAGAGGCTGGGGACACCACCGACCCAAAAGAACTTATTAAAATTGCGTTCAATGTTACCATTAAGAAAATTGGTGACAAGCTCAAGCAAACCGATCTCATGCACGAGGTTGAGAAGGAGCCCAGAGCCAAGATGGCACTTGACACGTGCAAGCAACTCTTGGATCTTTCCATCGGGGAGTTAACAAGGTCATTTGATGGAATGGGCAAGTTTGATGTCAAAAATCTCGACAAAATCTTCATGAATGTAAAGGTTTGGCTCACAGGTGCAGTTACATATCAAGATACATGCTTGGATGGGTTTGAGAACACCACGAGCGCAGCTGGTAAGAAGATGAAGGAACTGTTAACGACAAGCATGCACATGAGCAGCAATGCCCTTGCCATTGTCACGGATCTGGCTGACACTGTCTCAAATTTGAACGTCACAAACTTACTTGGACGTCGCCTCCTTCACGATTCTGATACTCTTTCTTGGGTTGATCATCGTATACTCCTTGATGCAGACACAAATACATTCAAACACAAGCCTAATGTGACCGTAGCCTTAGATGGCAGCGGAGATTTCAAGAGCATCAATGAGGCCTTGAAAAAGGTGCCTGATGAGAAGAACAAAAAGCCGTTTGTGATCTTCATCAAGGAAGGTGTTTACCAAGAGTACGTTGAAGTTACCAAGCATATGACCTACGTGGTGTTTGTAGGTGAAGGTGGCAAAAAGACCCGAATCACTGGCAACAAAAACTTTATAGATGGGGTTAACACCTACAGAACCGCCACCGTTGCTATTCAAGGAGATCACTTTGTCGCCATCAATATGGGTTTTGAAAACTCTGCTGGTCCCCACAAGCATCAAGCCGTGGCACTAAGGGTTCAAGGAGACAAGTCCATCTTTTACAATTGCTCAATGGATGGGTATCAGGACACACTTTATGTACACACCATGCGTCAATTCTACAGGGATTGCACCATCTCAGGTACCATCGACTTCATCTTTGGTAATGCGCTAGCCGTTTTCCAAAACTGCACTTTCGTGGTTCGAAAGCCCATGGAAAACCAGCAATGCATTGTGACAGCACAAGGAAGGAAAGAAAGGCAACAACCATCAGCAATAGTCATCCAAGGGGGTTCCATAGTGTCCGACCCTGAGTTCTACGCAGTGAGGCTCGATCACAAATCTTACCTAGCCCGTCCATGGAAGAATTTCTCCAGGACTGTCATCATGGACACCTATATTGATGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGACTAGAAGGCCCTTCTGGCATGGACACTTGCTTCTATGCTGAGTACCATAACACAGGTCCCGGTTCAGACAAATCAAAGCGTGTAAATTGGGCTGGGATCTGGAACCTTAATTCAAAAGCTGCACACTGGTTCTCACCCTCCAAGTTCTTTCATGGTTCTGATTGGATTGAGGTTACTGGGATTCCTTACTTCCCTGGTGTTCCTGAACACCACAGGCACAAAAAGACAATACTTAATTGGTGA 1923 0.4597 MMLPRQWQSSVKFPPDSENVSLRLSVECR*YGGSGDLGLLCRGFKHAGVMYDGVPQLKMSGADPQKGKRIAIIGVSGLLLVAMVVAVTVGVNSSQNGFDDDLEDNRKNHVTSTLKAVQTLCHPTDYKKECEESLIAEAGDTTDPKELIKIAFNVTIKKIGDKLKQTDLMHEVEKEPRAKMALDTCKQLLDLSIGELTRSFDGMGKFDVKNLDKIFMNVKVWLTGAVTYQDTCLDGFENTTSAAGKKMKELLTTSMHMSSNALAIVTDLADTVSNLNVTNLLGRRLLHDSDTLSWVDHRILLDADTNTFKHKPNVTVALDGSGDFKSINEALKKVPDEKNKKPFVIFIKEGVYQEYVEVTKHMTYVVFVGEGGKKTRITGNKNFIDGVNTYRTATVAIQGDHFVAINMGFENSAGPHKHQAVALRVQGDKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFIFGNALAVFQNCTFVVRKPMENQQCIVTAQGRKERQQPSAIVIQGGSIVSDPEFYAVRLDHKSYLARPWKNFSRTVIMDTYIDDLIHPDGYLPWQGLEGPSGMDTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAAHWFSPSKFFHGSDWIEVTGIPYFPGVPEHHRHKKTILNW* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01887 639 ProSitePatterns Pectinesterase signature 2. 457 466 IPR033131 -
Rops6g01887 639 SUPERFAMILY Pectin lyase-like 310 625 IPR011050 -
Rops6g01887 639 SMART PMEI_2 111 263 IPR006501 GO:0004857
Rops6g01887 639 Pfam Pectinesterase 312 611 IPR000070 GO:0030599|GO:0042545
Rops6g01887 639 Pfam Plant invertase/pectin methylesterase inhibitor 115 263 IPR006501 GO:0004857
Rops6g01887 639 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 115 267 IPR035513 -
Rops6g01887 639 CDD PMEI-like_3 118 268 - -
Rops6g01887 639 ProSitePatterns Pectinesterase signature 1. 338 357 IPR018040 -
Rops6g01887 639 Gene3D - 306 626 IPR012334 -
Rops6g01887 639 FunFam Pectinesterase 112 268 - -
Rops6g01887 639 NCBIfam pectinesterase inhibitor domain 112 267 IPR006501 GO:0004857
Rops6g01887 639 FunFam Pectinesterase 306 626 - -
Rops6g01887 639 Gene3D Invertase/pectin methylesterase inhibitor family protein 111 268 IPR035513 -
Rops6g01887 639 PANTHER PECTINESTERASE 75 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01887 Rops-Chr6 36750501 36757237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01887 62 626 Carbohydrate Esterase AT3G05610 49.206 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01887 K01051 - gmx:100803527 997.267