Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01886 ATGTCTGATGGAGATGCACCAAAGAAGGGAAGGAGAATCGCCATCATTGGCGTGTCTGGTCTGTTGCTAGTGGCAATGGTTGTTGCCGTTACAGTTGGCGTCAACCTCCGTCAAAATGGTTCCGACGATGATATAGAGGACAACAGGAAGAACCACGTGACTTCCACAGTAAAAGCTGTGCAAACCCTATGTCATCCCACCGATTACAAGAAGGAATGTGAGGAAAGCCTCATAGCAGAGGCCGGGGACACCACAGACCCAAAAGAACTGATTAAAATTGCGTTCAATGTCACTATTAAGAAAATTGGTGACAAGCTCAAGGAAACCGATCTCATGCACGAGGTTGAGAAGGAGCCCAGAGCCAAGATGGCACTTGACACGTGCAAGCAACTCTTAGATCTTTCCATTGGGGAGTTAACAAGGTCTTTTGATGGAATGGGCGAGTTTGATTTCAAAAATCTCGACAAAATTCTCATGAATGTAAAGGTTTGGCTCACAGGTGCAGTTACATACCAAGATACATGCTTGGATGGGTTCGAGAACACCACAAGTGAAGCTGGTAAGAAGATGAAGGATCTATTAACGACAGGCATGCACATGAGCAGCAATGCCCTTGCCATTGTCACGGATCTTGCAGACACTGTCTCAAATTTAAACGTCACAAACTTACTTGGGCGTCGCCTCCTTCACGATTCTGAGACTCCCTCTTGGGTTGATCACCGTATACTCCTTGATGCAGATACAAATACATTCAAACACAAGCCTAATGTGACCGTAGCCTTAGATGGCAGCGGAGATTTCAAGAGCATCAATGAGGCCTTGAAAATGGTGCCTGATGAGAAGAACAAAAAGCCATTTGTGATCTTCATCAAGGAAGGTGTTTACCAAGAGTACGTTGAAGTTACCAAGCATATGACCCACGTGGTGTTTGTAGGTGAAGGTGGCAAAAAGACCCGAATCACCGGCAACAAAAACTTTATAGATGGGATTAACACCTACAGAACCGCCACTGTTGCTATTCAAGGAGATCACTTTGTCGCCATCAATATGGGTTTTGAAAACTCTGCTGGTCCCCACAAGCATCAAGCCGTGGCACTAAGGGTTCAAGGAGACAAGTCCATCTTCTACAATTGCTCAATGGATGGGTATCAGGACACACTTTACGTACACACCATGCGTCAATTCTACAGGGATTGCACCATTTCAGGTACCATCGACTTCGTCTTTGGTAATGCACTAGCCGTTTTCCAAAACTGCACTTTCGTGGTTCGAAAGCCCATGGAAAACCAGCAATGCATTGTGACAGCACAAGGAAGGAAAGAAAGGCAACAACCATCAGCAATAGTCATCCAAGGGGGTTCCATAGTGTCCGACCCTGAGTTCTACGCAGTGAGGCTCGATCACAAATCTTACCTAGCCCGTCCATGGAAGAATTTCTCCAGGACTGTCATCATGGACACCTATATTGATGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGACTAGAAGGCCCTTCTGGAATGGACACTTGCTTCTATGCTGAGTACCATAACACAGGTCCCGGTTCAGACAAATCAAAGCGTGTAAATTGGGCTGGGATCTGGAACATTAATTCAAAAGCTGCACGCTGGTTCTCACCCTCCAAGTTCTTTCATGGTTCTGATTGGATTGAGGTTACTGGGATTCCTTACTTCCCTGGTGTTCCTGAACACCACAAGCACAAAAAGACAACACTTAATTGGTGA 1752 0.4561 MSDGDAPKKGRRIAIIGVSGLLLVAMVVAVTVGVNLRQNGSDDDIEDNRKNHVTSTVKAVQTLCHPTDYKKECEESLIAEAGDTTDPKELIKIAFNVTIKKIGDKLKETDLMHEVEKEPRAKMALDTCKQLLDLSIGELTRSFDGMGEFDFKNLDKILMNVKVWLTGAVTYQDTCLDGFENTTSEAGKKMKDLLTTGMHMSSNALAIVTDLADTVSNLNVTNLLGRRLLHDSETPSWVDHRILLDADTNTFKHKPNVTVALDGSGDFKSINEALKMVPDEKNKKPFVIFIKEGVYQEYVEVTKHMTHVVFVGEGGKKTRITGNKNFIDGINTYRTATVAIQGDHFVAINMGFENSAGPHKHQAVALRVQGDKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMENQQCIVTAQGRKERQQPSAIVIQGGSIVSDPEFYAVRLDHKSYLARPWKNFSRTVIMDTYIDDLIHPDGYLPWQGLEGPSGMDTCFYAEYHNTGPGSDKSKRVNWAGIWNINSKAARWFSPSKFFHGSDWIEVTGIPYFPGVPEHHKHKKTTLNW* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01886 583 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Rops6g01886 583 FunFam Pectinesterase 56 212 - -
Rops6g01886 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 212 IPR035513 -
Rops6g01886 583 FunFam Pectinesterase 250 570 - -
Rops6g01886 583 Gene3D - 254 571 IPR012334 -
Rops6g01886 583 PANTHER PECTINESTERASE 19 560 - -
Rops6g01886 583 CDD PMEI-like_3 62 212 - -
Rops6g01886 583 Pfam Pectinesterase 256 555 IPR000070 GO:0030599|GO:0042545
Rops6g01886 583 SUPERFAMILY Pectin lyase-like 254 569 IPR011050 -
Rops6g01886 583 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Rops6g01886 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
Rops6g01886 583 SMART PMEI_2 55 207 IPR006501 GO:0004857
Rops6g01886 583 NCBIfam pectinesterase inhibitor domain 56 211 IPR006501 GO:0004857
Rops6g01886 583 Pfam Plant invertase/pectin methylesterase inhibitor 59 207 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01886 Rops-Chr6 36733576 36750552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01886 5 580 Carbohydrate Esterase AT3G05610 49.481 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01886 K01051 - gmx:100803527 1020.38