Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01885 ATGCATCGTCCAACCACCGACCATTGGACTGCTATGAAACGTCTCTTGCGTTATCTATGTGGTACTTCTAATCATGGCATTTGTTTTCATCGTGACTCACCACTGTCACTCCATGCCTTTTCTGATGCTGATTGGGCAGGAAACAAGGAGAATTTCTCTTCTACCAGTGCTTATATTGTTTATCTTGGTCGCAATCCTATTTCCTGGAGTTTCAAGAAGCAACATATGATTACTCTCTCCTTATTGACCTCCATATTCAGCTACCTCAGAGTTCCTCAACTCAAGATGTCTGGGGCAGATCCACAGAAGGGAAAGAGAATCGCCATCATTGGCGTATCTGGCCTATTGTTAGTGGCTATGGTCGTTGCCGTCACAGTTGGCGTCAACAGCAGTCAAAATGGTTTTGACGATGATCTAGAAGATAACAGGAAGAACCACGTGACTTCCACATTAAAAGCAGTTCAAACCCTTTGCCATCCCACTGATTACAAAAAGGAATGTGAGGAAAGCCTTATAGCAGAGGCTGGGGACACCACCGACCCAAAAGAACTTATTAAAATTGCGTTCAATGTTACCATTAAGAAAATTGGTGACAAGCTCAAGCAAACCGATCTCATGCACGAGGTTGAGAAGGAGCCCAGAGCCAAGATGGCACTTGACACGTGCAAGCAACTCTTGGATCTTTCCATCGGGGAGTTAACAAGGTCATTTGATGGAATGGGCAAGTTTGATGTCAAAAATCTCGACAAAATCTTCATGAATGTAAAGGTTTGGCTCACAGGTGCAGTTACATATCAAGATACATGCTTGGATGGGTTTGAGAACACCACGAGCGCAGCTGGTAAGAAGATGAAGGAACTGTTAACGACAAGCATGCACATGAGCAGCAATGCCCTTGCCATTGTCACGGATCTGGCTGACACTGTCTCAAATTTGAACGTCACAAACTTACTTGGACGTCGCCTCCTTCACGATTCTGATACTCTTTCTTGGGTTGATCATCGTATACTCCTTGATGCAGACACAAATACATTCAAACACAAGCCTAATGTGACCGTAGCCTTAGATGGCAGCGGAGATTTCAAGAGCATCAATGAGGCCTTGAAAATGGTGCCTGATGAGAAGAACAAAAAGCCGTTTGTGATCTTCATCAAGGAAGGTGTTTACCAAGAGTACGTTGAAGTTACCAAGCATATGACCTACGTGGTGTTTGTAGGTGAAGGTGGCAAAAAGACCCGAATCACTGGCAACAAAAACTTTATAGATGGGGTTAACACCTACAGAACCGCCACCGTTGCTATTCAAGGAGATCACTTTGTCGCCATCAATATGGGTTTTGAAAACTCTGCTGGTCCCCACAAGCATCAAGCCGTGGCACTAAGGGTTCAAGGAGACAAGTCCATCTTCTACAATTGTTCAATGGATGGGTATCAGGACACACTTTATGTACACACCATGCGTCAATTCTATAGGGATTGCACTATCTCAGGTACCATCGACTTCATCTTTGGTAATGCGCTAGCCGTTTTCCAAAACTGCACTTTCGTGGTTCGAAAGCCCATGGAAAACCAGCAATGCATTGTGACAGCACAAGGAAGGAAAGAAAGGCAACAACCATCAGCAATAGTCATCCAAGGGGGCTCCATAGTGTCCGACCCTGAGTTCTACGCAGTGAGGCTCGATCACAAATCTTACCTAGCCCGTCCATGGAAGAATTTCTCCAGGACTGTCATCATGGACACCTATATTGATGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGACTAGAAGGCCCTTCTGGCATGGACACTTGCTTCTATGCTGAGTACCATAACACAGGTCCCGGTTCAGACAAATCAAAGCGTGTAAATTGGGCTGGGATCTGGAACCTTAATTCAAAAGCTGCACATTGGTTCTCACCCTCCAAGTTCTTTCATGGTTCTGATTGGATTGAGGTTACTGGGATTCCTTACTTCCCTGGTGTTCCTGAACACCACAGGCACAAAAAGACAATACTTAATTGGTGA 2034 0.4479 MHRPTTDHWTAMKRLLRYLCGTSNHGICFHRDSPLSLHAFSDADWAGNKENFSSTSAYIVYLGRNPISWSFKKQHMITLSLLTSIFSYLRVPQLKMSGADPQKGKRIAIIGVSGLLLVAMVVAVTVGVNSSQNGFDDDLEDNRKNHVTSTLKAVQTLCHPTDYKKECEESLIAEAGDTTDPKELIKIAFNVTIKKIGDKLKQTDLMHEVEKEPRAKMALDTCKQLLDLSIGELTRSFDGMGKFDVKNLDKIFMNVKVWLTGAVTYQDTCLDGFENTTSAAGKKMKELLTTSMHMSSNALAIVTDLADTVSNLNVTNLLGRRLLHDSDTLSWVDHRILLDADTNTFKHKPNVTVALDGSGDFKSINEALKMVPDEKNKKPFVIFIKEGVYQEYVEVTKHMTYVVFVGEGGKKTRITGNKNFIDGVNTYRTATVAIQGDHFVAINMGFENSAGPHKHQAVALRVQGDKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFIFGNALAVFQNCTFVVRKPMENQQCIVTAQGRKERQQPSAIVIQGGSIVSDPEFYAVRLDHKSYLARPWKNFSRTVIMDTYIDDLIHPDGYLPWQGLEGPSGMDTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAAHWFSPSKFFHGSDWIEVTGIPYFPGVPEHHRHKKTILNW* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01885 677 CDD PMEI-like_3 156 306 - -
Rops6g01885 677 SMART PMEI_2 149 301 IPR006501 GO:0004857
Rops6g01885 677 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 153 305 IPR035513 -
Rops6g01885 677 FunFam Pectinesterase 150 306 - -
Rops6g01885 677 ProSitePatterns Pectinesterase signature 2. 495 504 IPR033131 -
Rops6g01885 677 Gene3D - 348 665 IPR012334 -
Rops6g01885 677 CDD RNase_HI_RT_Ty1 38 80 - -
Rops6g01885 677 Gene3D Invertase/pectin methylesterase inhibitor family protein 149 306 IPR035513 -
Rops6g01885 677 ProSitePatterns Pectinesterase signature 1. 376 395 IPR018040 -
Rops6g01885 677 Pfam Pectinesterase 350 649 IPR000070 GO:0030599|GO:0042545
Rops6g01885 677 NCBIfam pectinesterase inhibitor domain 150 305 IPR006501 GO:0004857
Rops6g01885 677 PANTHER PECTINESTERASE 113 654 - -
Rops6g01885 677 SUPERFAMILY Pectin lyase-like 348 663 IPR011050 -
Rops6g01885 677 FunFam Pectinesterase 344 664 - -
Rops6g01885 677 Pfam Plant invertase/pectin methylesterase inhibitor 153 301 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01885 Rops-Chr6 36732944 36737959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01885 100 664 Carbohydrate Esterase AT3G05610 49.206 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01885 K01051 - gmx:100803527 996.882