Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops6g01884 | ATGGAAAACCAGCAATGCATTGTGACAGCACAAGGAAGGAAAGAAAGGCAACAACCATCAGCAATAGTCATCCAAGGGGGCTCCATAGTTTCCGACCCTGAGTTCTACGCAGTGAGGCTCGATCACAAATCTTACCTAGCTCGTCCATGGAAGAATTTCTCCAGGACTGTCATCATGGACACCTATGTTAATGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGACTAGAAGGCCCTTCTGGCATGGACACTTGCTTCTATGCTGAGTACCATAACACAAGTCTCGGTTCAGACAAATCAAAGCGTGTAAATTGGGGTGCAGGATCTGGAACCTTAATTCAAAAGCTGCACATTGGTTCTCACCCTCCAAGTTCTTTCATGGTTCTGATTGGATTGAGGTTACTGGGATTCCTTACTTCCCAGGTGTTCCTGAACACCACAGGCACAAAAAGACAATACTTAATTGGTGATGACATATGTTTGCAGAGTCTAACAATTATGCTTGTGTGGTTCCATTCTTTCTATCATTTTGATTTCATTGATTAA | 552 | 0.4293 | MENQQCIVTAQGRKERQQPSAIVIQGGSIVSDPEFYAVRLDHKSYLARPWKNFSRTVIMDTYVNDLIHPDGYLPWQGLEGPSGMDTCFYAEYHNTSLGSDKSKRVNWGAGSGTLIQKLHIGSHPPSSFMVLIGLRLLGFLTSQVFLNTTGTKRQYLIGDDICLQSLTIMLVWFHSFYHFDFID* | 184 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops6g01884 | 183 | Gene3D | - | 1 | 121 | IPR012334 | - | |
| Rops6g01884 | 183 | PANTHER | PECTINESTERASE | 1 | 109 | - | - | |
| Rops6g01884 | 183 | SUPERFAMILY | Pectin lyase-like | 2 | 108 | IPR011050 | - | |
| Rops6g01884 | 183 | Pfam | Pectinesterase | 1 | 109 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops6g01884 | Rops-Chr6 | 36730211 | 36730762 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops6g01884 | 1 | 107 | Carbohydrate Esterase | AT5G49180 | 42.991 | 5.52e-29 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops6g01884 | K01051 | - | lja:Lj0g3v0289939.1 | 202.986 |