Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01883 ATGTCTGGGGAAGATGCACAGAAGGGAAAGAGAATCGCCATCATCGGTGTGTCTACCCTGTTGCTAGTGGCTATGGTCGTTGCCATCACAATTGGCGTCAACAACATTCAAAGTGATTCCGACAATGAAATAGAAGACAACAGGAAGAACCACGTGACTTCCACAATAAAAGTAGTTCAAACCTTATGCGATCCCACGGGTTACAAAAAAGAATGTGAGGAAAACCTCATAGAAGAGGCTGGGGACACCAAGGACCCAAAAGAACTGCTTAAAATTGCGTTCAATGTCACTATTAAGAAAATTGGTGGCAAGATCAAGGAAACTAATCTCATGCACGAGGTTGAGAATGAGCCCAGAGCCAAGATGGCACTTGACACATGCAAGCAACTCTTGGAGCTTTCCATCGAGGAATTGACGAGGTCTTTTGATGGAATTGACAGGTTTGATCTCAAAAATCTAGACAAAATCCTCATGAATATGAAGGTTTGGCTCACAGGTGCACTTACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACGAGCGCAGCTGGTAAGAAGATGAAGGAACTATTAAAGACAAGCATGCACATGAGCAGCAATGCCCTTGCCATTGTAACGGATCTGGCTGACACTGTCTCTAATTTGAACATCACAAAGTTACTTGGGCGTCACCTCCTTCAATATTCTGAGACTCCCTCCTGGGTTGGTCAGCGTATAATCCTTGATGCAGATACAAATACATTCAAACACAAGCCTAATGTGACCGTAGCCTTAGATGGCAGCGGAGATTTCAAAAGCATCAATGAGGCCTTGAAAAAGGTGCCTGAGAATAGCAAAATTCCGTTTGTGATCTTCATCAAGGAAGGCATTTACCAAGAGTACGTTGAAGTTACCGATCAAATGACTCACGTGGTGTTTGTCGGTGAAGGTGGCAACAAGACCCGAATCGTTGGTAACAAAAACTTCATGGATGGAATTAACACCTACAGAACCGCCACTGTTGCCATTCTAGGAGATCATTTTGTTGCCATCAATATGGGTTTTGAGAACTCCGCCGGCCCCAAAAAGCTTCAAGCGGTGGCATTAAGGGTTCAAGGAGACAAGTCCATCTTCTACAATTGCTCAATGGATGGGCATCAAGACACACTTTATGTACACGCCATGCGTCAATTCTACAGGAATTGCACCATCTCAGGTACCATCGACTTCGTCTTTGGTAATGCACTAGCCGTTTTCCAGAATTGCACTTTTGTGGTTCGAAAGCCAATGGAAAACCAACAATGCATTGTGACTGCACAAGGAAGGATAGAAAGACAAGAACCATCAGCAATAGTCATCCAAGGGGGCTCCATTGTGCCCGGCCCTGAGTTCCACACGGTGAGGTTTGAGAAGAAGGCCTACCTAGCCCGTCCATGGAAGAATTACTCGAGGACGGTCATCATGGACACCTACATTGACGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGACTAGAGGGTCCTTCTGGCATGGGCACTTGTTTTTATGCTGAGTATCGCAACACTGGCCCCGGTTCAGACAAATCCAAGCGTGTAAATTGGGCTGGCATCCGGAACCTCAATTCACGATCTGCACACTGGTTCTCACCATCCAAGTTCTTTCATGGTTCTGATTGGATTGAGGTTACCGGAATTCCTTACTTGCCTGGTATTCGTGAACACCACAGGCACCCAAAGACTACTTGA 1737 0.4542 MSGEDAQKGKRIAIIGVSTLLLVAMVVAITIGVNNIQSDSDNEIEDNRKNHVTSTIKVVQTLCDPTGYKKECEENLIEEAGDTKDPKELLKIAFNVTIKKIGGKIKETNLMHEVENEPRAKMALDTCKQLLELSIEELTRSFDGIDRFDLKNLDKILMNMKVWLTGALTYQDTCLDGFENTTSAAGKKMKELLKTSMHMSSNALAIVTDLADTVSNLNITKLLGRHLLQYSETPSWVGQRIILDADTNTFKHKPNVTVALDGSGDFKSINEALKKVPENSKIPFVIFIKEGIYQEYVEVTDQMTHVVFVGEGGNKTRIVGNKNFMDGINTYRTATVAILGDHFVAINMGFENSAGPKKLQAVALRVQGDKSIFYNCSMDGHQDTLYVHAMRQFYRNCTISGTIDFVFGNALAVFQNCTFVVRKPMENQQCIVTAQGRIERQEPSAIVIQGGSIVPGPEFHTVRFEKKAYLARPWKNYSRTVIMDTYIDDLIHPDGYLPWQGLEGPSGMGTCFYAEYRNTGPGSDKSKRVNWAGIRNLNSRSAHWFSPSKFFHGSDWIEVTGIPYLPGIREHHRHPKTT* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01883 578 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Rops6g01883 578 FunFam Pectinesterase 249 568 - -
Rops6g01883 578 Gene3D - 249 568 IPR012334 -
Rops6g01883 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 211 IPR035513 -
Rops6g01883 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 210 IPR035513 -
Rops6g01883 578 SUPERFAMILY Pectin lyase-like 253 567 IPR011050 -
Rops6g01883 578 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Rops6g01883 578 NCBIfam pectinesterase inhibitor domain 55 210 IPR006501 GO:0004857
Rops6g01883 578 SMART PMEI_2 54 206 IPR006501 GO:0004857
Rops6g01883 578 CDD PMEI-like_3 61 211 - -
Rops6g01883 578 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Rops6g01883 578 Pfam Pectinesterase 255 553 IPR000070 GO:0030599|GO:0042545
Rops6g01883 578 FunFam Pectinesterase 55 211 - -
Rops6g01883 578 PANTHER PECTINESTERASE 17 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01883 Rops-Chr6 36721895 36724046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01883 4 578 Carbohydrate Esterase AT3G05610 46.620 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01883 K01051 - gmx:100820556 928.317