Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01881 ATGGGGATCGATCTTAAAGCCGGAGGTAAGAGCAAAAAGACGAAAAGAACAGCACCTAAGTCCAATGATATCTATCTCAAGCTCCTCGTCAAGCTTTATCGCTTCCTGGTTCGAAGAACTGGCAGCAATTTCAATGCTGTAGTCCTCAAACGCATGTTCATGAGCAAGGTTAACAAGCCTCCACTATCTTTGTCAAGGTTGATCAAGTTTATGAAGGGGAAGGAAGGTAAGATTGCTGTAGTGGTGGGGACTATAACTGATGATACACGTGTTTATGAAGTTCCAGCCTTAAAAGTTACAGCACTCAGGTTTACAGAGACTGCACGTGCAAGAATAGAAAAGGCAGGTGGTGAATGCTTGACATTTGATCAGTTGGCTCTCAGGGCTCCTTTGGGACAGAACACGGTCCTTCTTAGAGGCCCGAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCCTGCTCCTGGTGTGCCACACAGCCACACCAAGCCTTATGTGCGAGCAAAGGGAAGGAAGTTCGAGAAGGCTAGAGGAAGGAGGAACAGCCGAGGATTTAGAGTTTGA 564 0.4681 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVVLKRMFMSKVNKPPLSLSRLIKFMKGKEGKIAVVVGTITDDTRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFEKARGRRNSRGFRV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01881 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Rops6g01881 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Rops6g01881 187 FunFam 60S ribosomal protein L18 1 187 - -
Rops6g01881 187 Gene3D - 1 187 - -
Rops6g01881 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01881 Rops-Chr6 36715955 36718064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01881 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.495 2.98e-105 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01881 K02883 - gmx:100791657 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01881 6 36715955 36718064 Rops6g01881 6 36715955 36718064 ECH
Rops8g03951 8 80676757 80678775 Rops6g01881 6 36715955 36718064 PCT