Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01879 ATGGAGGGAGATTCATCTTCATCCTGCAAGCGACGATTTCCTATTTCCATTGATGTTATAAACTGTTTTGAGGAGGGTTTTGGTCTTCTTCCCATGAGTTTCACATCTGAATATGGTGATGTTATTGGATCGTCGGTTTCAATAAGTGCAACTGGTGGCTGGATTTTTGAGGTGTCCTTTTTTCAATGCGATAAGGAAGGTCTTTTAACAAAAGGATGGTGTGATTTTGTTTCTGCTTTTAAAATTGATGGGAAAGAAAAAGTTGTTTTGAAATATTTTGGAGAATGTTTTTTTGGCTTCAGTAAATTTGAACAACATTTAGATATGAAATTTGGACTGCATGGTTCTGCTAATTTTTCTGATGCATTAGGCAACATGCATGAAGTGAGAATCACAGATTTCTCCTTAAAGTTTGATCGACAGCATCTTCCTGCACGATTGGTGAATCAGTATATGAATTTACGAATTTCAACCATTACTATGAAGACCGATTCAGGTCGTGTCTATGAGTGTCCTCTTTACAAGGATGATAGGAATGAAAATGAAGCAAGAATTTCCAAGGGATGGAAGGCTTTATGTGATGATATGAGTTTGGATGCAGGAGATCGAGTCAAATTTCACTCCCTCGATCCCAGTCGAAACATTTTTCATATTTTTGTTAACAAACCTTGA 672 0.3676 MEGDSSSSCKRRFPISIDVINCFEEGFGLLPMSFTSEYGDVIGSSVSISATGGWIFEVSFFQCDKEGLLTKGWCDFVSAFKIDGKEKVVLKYFGECFFGFSKFEQHLDMKFGLHGSANFSDALGNMHEVRITDFSLKFDRQHLPARLVNQYMNLRISTITMKTDSGRVYECPLYKDDRNENEARISKGWKALCDDMSLDAGDRVKFHSLDPSRNIFHIFVNKP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01879 223 SUPERFAMILY DNA-binding pseudobarrel domain 133 220 IPR015300 -
Rops6g01879 223 ProSiteProfiles B3 DNA-binding domain profile. 126 223 IPR003340 GO:0003677
Rops6g01879 223 SUPERFAMILY DNA-binding pseudobarrel domain 26 103 IPR015300 -
Rops6g01879 223 Pfam B3 DNA binding domain 138 219 IPR003340 GO:0003677
Rops6g01879 223 Gene3D - 19 107 IPR015300 -
Rops6g01879 223 Gene3D - 117 222 IPR015300 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops6g01879 B3 6.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01879 - K09287 osa:4333471 47.7506