Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01878 ATGCAAAACGAGACCTGCTCTTTCTTTTTTCGCCCTAGGTCTCTGTTTCTCTCTTCTTCACCGCGCCACTCCTCTCCTCTTTGCTGCTCCTCGTCGCCACTCCCTTGTGCTGCTCACCGGACGTCCACCACGGAGAGATTTTTTCTCTCTAATCAATCTTTCTCGATCCCTATACAGGTATGGTTTCTCTTTCAGTCACGAGGTGATGGGGGAGGTGGGGAGGGAAGTGGTGGTGGTGGTGTTTTCGGAGGTGGGGGCCAACTCCATACCCTAATTTCTAGACGCCGCTCATTTCTTCACTGTGCTGTTCTCTCTTTCGGGGAGGCTCAAGTTGAGTTAAGTGGTTTCAGAGGATCACTGTACAAAGTGAAAAAAATGAGTCGAGGAGGTGCAGCTGGTACCAAGGGGAAGAAGAAGGTTGTGACATTTACCATTGATTGCGCGAAACCCGTGGAGGATAAGATCATGGACATTGCGTCTCTCGAGAAGTTTCTTCAAGAGAGGATTAAAGTTGGTGGCAAGGCTGGTGCTCTCGGTGACACTGTCACGGTTACTCGTGAGAAGGCCAAGATCACTGTTACTTCTGACAGCAACTTCTCCAAGCGGTATCTCAAGTACTTAACAAAGAAGTACTTGAAGAAACACAATGTACGGGACTGGCTCAGAGTGATTGCTTCGAACAAAGATAGAAATGTATATGAACTGAGGTACTTCAACATTGCTGAGAATGAGGGAGAGGAAGAAGATTAA 750 0.4773 MQNETCSFFFRPRSLFLSSSPRHSSPLCCSSSPLPCAAHRTSTTERFFLSNQSFSIPIQVWFLFQSRGDGGGGEGSGGGGVFGGGGQLHTLISRRRSFLHCAVLSFGEAQVELSGFRGSLYKVKKMSRGGAAGTKGKKKVVTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTREKAKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01878 249 PANTHER 60S RIBOSOMAL PROTEIN L22 122 249 IPR002671 GO:0003735|GO:0005840|GO:0006412
Rops6g01878 249 Gene3D - 131 249 IPR038526 -
Rops6g01878 249 Pfam Ribosomal L22e protein family 138 247 IPR002671 GO:0003735|GO:0005840|GO:0006412
Rops6g01878 249 FunFam 60S ribosomal protein L22-2 130 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01878 Rops-Chr6 36653599 36662832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01878 126 249 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 3.19e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01878 K02891 - pop:18098657 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01878 6 36653599 36662832 Rops6g01878 6 36653599 36662832 ECH
Rops8g03953 8 80769762 80771707 Rops6g01878 6 36653599 36662832 ECH
Rops6g01878 6 36653599 36662832 Rops8g03953 8 80769762 80771707 ECH
Rops6g01878 6 36653599 36662832 Rops6g02141 6 39716946 39718390 ECH
Rops8g03953 8 80769762 80771707 Rops6g01878 6 36653599 36662832 PCT