Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01876 ATGAGTGGCCGGTCAAGTCGCACAATTTATGTTGGCAACCTCCCTGGTGATATTCGCTTGAGAGAAGTAGAGGATCTTTTCTACAAGTATGGTCCTATCGTTGACATTGACTTGAAGATTCCTCCAAGACCACCGGGTTATGCTTTTGTTGAGTTTGAGGATGCTCGTGATGCGGAAGACGCAATCCACTATCGAGATGGTTACAATTTTGACGGTTTTCGATTACGAGTTGAACTTGCGCATGGTGGACGGGGATATTCATCATCAGAAGACCGTTACAGTAGTTATAGTGGTAGTCGTGGAGTTTCCAGGCGTTCTGACTATCGTGTTCTGGTGACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTGAAGCTGGTGATGTGTGTTTTTCTCAAGTGTTCCGTGAGCGTGGAGGCATGACTGGGATAGTGGATTATACCAATTATGATGATATGAAATATGCTATCAGGAAACTCAATGACTCAGAATTTCGAAATGCCTTTTCTCGGGCATACATATGA 540 0.4444 MSGRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIHYRDGYNFDGFRLRVELAHGGRGYSSSEDRYSSYSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMREAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLNDSEFRNAFSRAYI* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01876 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Rops6g01876 179 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 172 - -
Rops6g01876 179 CDD RRM1_SF2_plant_like 8 79 - -
Rops6g01876 179 Gene3D - 2 108 IPR012677 -
Rops6g01876 179 Gene3D - 109 179 IPR012677 -
Rops6g01876 179 SUPERFAMILY RNA-binding domain, RBD 5 172 IPR035979 GO:0003676
Rops6g01876 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 179 IPR000504 GO:0003723
Rops6g01876 179 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 107 - -
Rops6g01876 179 SMART rrm1_1 8 78 IPR000504 GO:0003723
Rops6g01876 179 SMART rrm1_1 109 178 IPR000504 GO:0003723
Rops6g01876 179 FunFam serine/arginine-rich splicing factor SR34A-like 108 179 - -
Rops6g01876 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 172 IPR000504 GO:0003723
Rops6g01876 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01876 Rops-Chr6 36624649 36632903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01876 9 170 Eukaryotic Initiation Factors Gene Family AT4G34110 23.669 1.59e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01876 K12890 - gmx:100794282 316.62