Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01866 ATGGATAGCAACAACGTATCTTCCGATCAAGTCATTGCAGAAATGGTTGAAATGGGTTTTGAACATTCCAATATTCTGGAAGCCATTAAAGTAGTGGGTCCCTCCATTCCCAGCGTTGTGGAGCATATCTTCAATACTACTAACCTTCACCGTGAAGAAGCATCCACTCCCCACACCCACAAACTTCGTTCACGTAATGGGAATTCTCTCAAAAAACGAGCTTTACCCTCATCCCATCAAGTTCCAAAGTCGAGGACACTCGACAATTATTTCCAATCCACTCATAAAGTCAAAGAGAGCAAGAACAATGACGTTGTTGTTGTTGTTGATGTGGAAGAGCACAATGAGCCTTTACCTCAAATTGGAGTTGATTCCTGTGATATTGCATCTGATTGGGAGCAGAGAGTTGGCAATCTCTTGCAAAAGCATTTCGGTTTTTCAACCTTGAAAAGTTTTCAAAAAGAGGCCCTTGGTGCTTGGATTGCTAATAAAGATTGTCTTGTTCTGGCTGCAACTGGATCTGGGAAATCTCTATGCTTTCAGATTCCTGCATTGTTGACTGGGAAAGTGGTGGTTGTGATTTCCCCCTTGATAAGCCTGATGCATGATCAATGCTTAAAGTTAACAAGACAGGGAATCGGTGCTTGTTTTCTTGGCTCTGGGCAACCTGATAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTATAGTATAATATATGTTTGCCCAGAGACAGTCCTAAGATTGATTGAACCACTACAGAAGCTTGCAGAAAGCCGTGGTATTGCTCTATTCGCAATTGATGAGGTGCATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCATCCTACAGCCGACTGTCTGTGTTGAGGGAAAATTTCAGTACTGGCAAGCTAAAATCCCTGAAATTTGATATTCCTCTGATGGCCTTGACAGCTACAGCTACCAAGAGGGTTCAAGAAGACATTTTAAAATCACTATGCATGTCAGAAGGAACAAATGTTGTTCTCACATCATTTTTTCGACCTAATTTACGCTTCATGGTAAAGCATAGTAGAACATCACGGGCTTCATATGAGAAAGATTTTCATGAATTGATTAAAGTATATGGTAGAAAACAAAATATTGGTGGAAATAAAAAAGCTTTCACCTCAGATAATTCAGATGATGTTTCCAATAACTCTGATGCTAGTAGAAGCTCTGATACAGACAGTGTTTCTTCTTATGACGTGGATGACAACCAAGATGACGATGATGATAGAGATATTGATATATTTCACACAGGCAGCACAGACAATTTTATAAAGGGAAAAGAATTGTCAATTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAATGTGTATGATGCGGATGAAGAAAGACTCAAAATTCTTAAGGAGCCTTTGGAACAAGGACCAGCAATCATATATGTACCCACCAGAAAAGAAACACTGAGAATTGCGAAGTATCTATGCAAGTTTGGCATGAAGGCTGCTGCTTATAATGCAGGGCTGCCTAAGTTGAATCTAAGAAGGGTTCATCAAGAGTTTCATGAAAATACTTTAGAGGTTATTGTTGCAACAGTAGCGTTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAATCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTATATGCAAACCTAGCAAGAAAGCCATCACTTTTGCCGAGTCGTAGAAATGAAGATCAGATAAAACATGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGATCACTTCATGTTGTCGAGCAAGAACACTTGTGGAGTACTTTGGAGAGGATTTCAGTCCTCAGAAATGTCTCTTATGTGACGTGTGCATTAATGGACCACCTCAAAGGCAGAATCTAAAAGAGGAGGCCTGTATTTTACTGCAAACTATAGCTGCCCATAATGTTTGTAGCTATTCCATGGATTACTCATACGATGATGATATCCATTTCGACTCCAAAGATAGAAGACTGGGAGAGAGGGCAAGTCTTGAGATGTTAGTTAGAAATATAAGGGAGCAGTTCCCAAAGTTTTTAACCACTGATACATTATGGTGGAGTGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGAGAAGGAGATGACCGGACCCATGTTCAGATAAAATGCCCTGAGCTAACAGAACTGGGATTGGAATTTATGAAGTCCATGAGTGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGCAAGGGAAACTCACAAACCATATTCCTCATTCTCAGAATGGGGAAAAGGTCACAAACCATATTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTGGAAAGAATGCAACTCAATAGAAATCCAAGGATGATGCAAAGTCCCAAAAAGCAACCAAAAAGGAAAGCTAAAAAAGTGAAACCTGATTTGAGGACTTCTCGAGGTAGACTGGCAGCAAGACTCTCAAAATATAAGTGA 2568 0.4046 MDSNNVSSDQVIAEMVEMGFEHSNILEAIKVVGPSIPSVVEHIFNTTNLHREEASTPHTHKLRSRNGNSLKKRALPSSHQVPKSRTLDNYFQSTHKVKESKNNDVVVVVDVEEHNEPLPQIGVDSCDIASDWEQRVGNLLQKHFGFSTLKSFQKEALGAWIANKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTRQGIGACFLGSGQPDNTVEKKAMRGMYSIIYVCPETVLRLIEPLQKLAESRGIALFAIDEVHCVSKWGHDFRPSYSRLSVLRENFSTGKLKSLKFDIPLMALTATATKRVQEDILKSLCMSEGTNVVLTSFFRPNLRFMVKHSRTSRASYEKDFHELIKVYGRKQNIGGNKKAFTSDNSDDVSNNSDASRSSDTDSVSSYDVDDNQDDDDDRDIDIFHTGSTDNFIKGKELSIEFLENDVDVFQNVYDADEERLKILKEPLEQGPAIIYVPTRKETLRIAKYLCKFGMKAAAYNAGLPKLNLRRVHQEFHENTLEVIVATVAFGMGIDKSNVRRIIHYGWPQSLESYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRNEDQIKHAYIMLSDCFRYGMITSCCRARTLVEYFGEDFSPQKCLLCDVCINGPPQRQNLKEEACILLQTIAAHNVCSYSMDYSYDDDIHFDSKDRRLGERASLEMLVRNIREQFPKFLTTDTLWWSGLARILEVKGYIREGDDRTHVQIKCPELTELGLEFMKSMSEQAFYVYPEADMLLARETHKPYSSFSEWGKGHKPYSSFSEWGKGWADPEIRRQRLERMQLNRNPRMMQSPKKQPKRKAKKVKPDLRTSRGRLAARLSKYK* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01866 855 Gene3D - 447 576 IPR027417 -
Rops6g01866 855 Gene3D - 115 341 IPR027417 -
Rops6g01866 855 MobiDBLite consensus disorder prediction 812 855 - -
Rops6g01866 855 Pfam RecQ zinc-binding 589 638 IPR032284 -
Rops6g01866 855 NCBIfam RecQ family ATP-dependent DNA helicase 139 368 IPR004589 GO:0004386|GO:0006310
Rops6g01866 855 Coils Coil 442 462 - -
Rops6g01866 855 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 46 IPR015940 -
Rops6g01866 855 MobiDBLite consensus disorder prediction 50 81 - -
Rops6g01866 855 MobiDBLite consensus disorder prediction 824 839 - -
Rops6g01866 855 MobiDBLite consensus disorder prediction 379 422 - -
Rops6g01866 855 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 450 605 IPR001650 -
Rops6g01866 855 FunFam ATP-dependent DNA helicase 119 341 - -
Rops6g01866 855 FunFam ATP-dependent DNA helicase 450 576 - -
Rops6g01866 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 577 IPR027417 -
Rops6g01866 855 FunFam ATP-dependent DNA helicase 578 756 - -
Rops6g01866 855 PANTHER DNA HELICASE RECQ FAMILY MEMBER 130 746 - -
Rops6g01866 855 SMART helicmild6 486 567 IPR001650 -
Rops6g01866 855 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 333 IPR014001 -
Rops6g01866 855 Gene3D - 578 763 IPR036388 -
Rops6g01866 855 SMART ultradead3 145 350 IPR014001 -
Rops6g01866 855 MobiDBLite consensus disorder prediction 379 408 - -
Rops6g01866 855 Pfam DEAD/DEAH box helicase 152 320 IPR011545 GO:0003676|GO:0005524
Rops6g01866 855 CDD DEXHc_RecQ 140 340 - -
Rops6g01866 855 Pfam Helicase conserved C-terminal domain 463 566 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01866 Rops-Chr6 36488129 36494384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01866 462 585 Eukaryotic Initiation Factors Gene Family AT5G11170 25.806 4.17e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01866 K10900 - gmx:100793222 1155.58