Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01862 ATGGCGGAAAGAAGCGAAAACACGACGACGAAAGAAGAAGAAGAAAACGAGGACCAAAGTTTCGAAGAGCTTGGATTGGACGCTCGTCTCGTTCGTGCCTTACTCAAGAAAGGAATCGACAAACCCACTCCAATTCAACGCGTCGCTATTCCACTCATTCTGGAAGGCAAAGATGTTGTTGCTCGAGCAAAAACGGGTTCTGGTAAGACGTTTGCGTACCTTCTCCCATTGCTTCAGAAACTGTTTACAGATAATGTTGATAGGAAAAAGCTAGCGCCAAATGCCTTTATTCTTGTTCCAACTCGTGAACTGTGTCAACAGGTATATGCGGAGGTTTTGTCGCTTATCGAGTTATGCAGGGTTCAACTGAAAGTTGTGCAGTTGAATAGCAATATGCTTGCTACTAACTTGAAGGCAGCACTGGTTGGACCCCCTGATGTTTTGATCTCCACTCCTGCTTGCATTGCTAAATGCTTGTCAGACGGCATACTTCAGCCTGCATCCATTAATGGTTCGCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAGATGATATTAAAGCTTTGACACCTCACGTACCCAGAAGTTGCCAGAGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTACACAACCCCTTTATTTTGACTTTGCCTGAAGTGGGAAATCACAAGGATGACATCATCCCTAAAAATGTTCAGCAGTTCTGGATCTCATGTCTTGCCAGTGATAAGTTGCTCTATGTCCTTGCTCTGTTGAAGTTGGAGTTGGTCCAAAAGAAAGTACTGATATTCACTAATACCATCGACATGAGTTTTAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAACTCTCGTCTCCATATTCTTGAGGAATTCAATGCTGGCCTATTTGATTATCTAATTGCAACGGATGTCAGCCAGTCAAAGGAGAAGGATGAAGCACCTAAGGAAAGTAATAATGGATCGCGGAAATCTAGAAAACACGCTAAGCTAAAATTAGATTCTGAATTTGGAGTAGCAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCAAGTGTTGCGGGATATGTACATCGAATTGGACGTACTGGAAGAGCATACAATCCTGGTGCTTCTATCTCTCTGGTTTCTTCAGATGAGATGGATACTTTGGAAGAAATAAGATCTTTCGTTGGGGATGATGAAAACAACGGCTCAAACTCAATTGCAGAGTTTCCCTTGCTCACCAAGAATGCAGTTGAATCTTTACGGTATAGGGCTGAGGATGTAGCAAAGAGCGTAACTAAAATTGCTGTCCGGGAATCACGAGCCCAGGATTTAAGGAATGAAATTTTGAACTCTGAAAAGTTGAAGGCCCACTTTGAAACTAATCCAAGAGACCTAGATCTATTGAAACATGACAAAGTTTTGAGCAAGAACGCCCCTCCTTCACACCTTCGCGATGTCCCTGACTACCTAATAGACAAAACAACAAAAGAGGCAAGGGCGAAGGTCAAGCTTGCAAGAGATGTGATGGGAAATGATAATCGCCGCCGGGGACCCAAGAGAAAATCAAGAAAAGGTGGAGACCCTCTAAAGGCCATCTCTGCTGCGGTATCAAAAAGACCGCGCAAAGTTTTTACAAAGGCTGGTGCAGGCCATAGCAATGCCAGTGATAAACAAAAACACAAAAAGATAAAGGCGCTATTTGATTGA 1797 0.4224 MAERSENTTTKEEEENEDQSFEELGLDARLVRALLKKGIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTDNVDRKKLAPNAFILVPTRELCQQVYAEVLSLIELCRVQLKVVQLNSNMLATNLKAALVGPPDVLISTPACIAKCLSDGILQPASINGSLETLVLDEADLLLSYGYEDDIKALTPHVPRSCQSLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDDIIPKNVQQFWISCLASDKLLYVLALLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQSKEKDEAPKESNNGSRKSRKHAKLKLDSEFGVARGIDFKNVYTVINFEMPSVAGYVHRIGRTGRAYNPGASISLVSSDEMDTLEEIRSFVGDDENNGSNSIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPSHLRDVPDYLIDKTTKEARAKVKLARDVMGNDNRRRGPKRKSRKGGDPLKAISAAVSKRPRKVFTKAGAGHSNASDKQKHKKIKALFD* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01862 598 Coils Coil 471 491 - -
Rops6g01862 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 447 IPR001650 -
Rops6g01862 598 CDD SF2_C_DEAD 248 410 - -
Rops6g01862 598 SMART ultradead3 38 251 IPR014001 -
Rops6g01862 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 231 IPR014001 -
Rops6g01862 598 Gene3D - 237 439 IPR027417 -
Rops6g01862 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 232 IPR027417 -
Rops6g01862 598 MobiDBLite consensus disorder prediction 535 598 - -
Rops6g01862 598 MobiDBLite consensus disorder prediction 336 357 - -
Rops6g01862 598 MobiDBLite consensus disorder prediction 1 21 - -
Rops6g01862 598 Gene3D - 1 233 IPR027417 -
Rops6g01862 598 SMART helicmild6 288 401 IPR001650 -
Rops6g01862 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 429 IPR027417 -
Rops6g01862 598 PANTHER RNA HELICASE 10 523 - -
Rops6g01862 598 MobiDBLite consensus disorder prediction 583 598 - -
Rops6g01862 598 CDD DEADc_DDX56 26 233 - -
Rops6g01862 598 Pfam Helicase conserved C-terminal domain 259 401 IPR001650 -
Rops6g01862 598 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 19 47 IPR014014 GO:0003724
Rops6g01862 598 Pfam DEAD/DEAH box helicase 43 220 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01862 Rops-Chr6 36452109 36460034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01862 20 441 Eukaryotic Initiation Factors Gene Family AT3G19760 26.241 9.02e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01862 K14810 - gmx:100800749 953.355