Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01861 ATGGATCAAGCGCGATCGACCTCTGGGAACAATGGTGAGGAGAATGTGGGGATTCCAGATGATTTGCGATGCAAGAGGTCAGATGGGAAACAATGGAGATGCACGGCCATGTCGATGCCAGATAAGACAGTGTGTGAGAAGCATTACATTCAAGCGAAGAAGAGAGCAGCGAATTCCGCCATGAGGGCTAATCTCAAGAAAGCTAAGAGGAAATCACTGTCATTAGGAGAGTCTGATATTTATTTGGAGAGCAAAAGTGATGATTTTGATACACCCCTTTCAACCATTAACAACAACAACAACAACAATCACTCTTCTTCCTCTGGGAAGAAGTTCTTGGATAAGGTTTCCAAGAATCAGTATCGTTATACCCCTGATAATGACACTAGAAGGGGTTCCTCCACCCGGCGCGCTCCCAAGCTTGATGATGATTCCCCTGAACGTGTGGATGTGGATGTCCCTCTCTATGAAGAGAATTGGGTCTCCTACGATTCGCCACCGGAGGATTCCGTTAGGAAAAGGTCGCACAGGAGCTTGGAGGCTAATGCTACAACTGAATACACTGATGGAACCTCGGATTCTTCTCAAGAGACTGGTGGGCAGACTTGTCATCAGTGTAGGAGGAATGACAGAGACAGAGTTACTTGGTGCCTTCGGTGTGATAGGAGAGGATACTGTGATAGTTGTATATCAACATGGTACTCAGACATTTCGTTGGATGAAATTCAGAGGATATGTCCTGCATGCCGTGGTATATGTAATTGCAAAACTTGCTTACGTAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTGCTAGATAAGTTACAGTATCTTCACTTGCTGCTCTCTTCGGTGCTTCCTGTAGTAAAGCAGATCCATCGTGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAATTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTATGTAGGATACCTATCACTGATTATCATCGACGCTGTCCAAGTTGCTCATATGATCTGTGCCTTAATTGTTGTCGAGATCTTCGAGAAGCAACTGTGTCTCACAGTGATGAACCCCAAACAGAGCAAGCAAAAACTTCTGATCGAAATCTATTATATAAGTTTCCTCGTTGGAAATCCAATGACAATGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGCTGTGATAATTCATCATTAAATTTAAGTCGGATTTTCAAAATGAATTGGGTTGCTAAATTAGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAATAATACTGATGGTCCACGAGAAACTGGGTTGATTGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGTGATGATAATTATCTTTATTGTCCCACATCTGAAGATCTCAAAACTCATGGAATTGCCAATTTTAGAAAGCACTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTATTTGATAGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGAGGTATTCGAGAGACAACAGATGAGAAAATAAAAGACGAAAACAGAATGGTGAAGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATCGAGCTTGGTCAGTTCATAAAAGGATACTCTGAGGGCCGTTTTCATGAAAATGGTTGGCCACAAATATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAGTTTCTATTGTACCAAAGACCTGAATTTATCAGCAAACTGCCTTTACTTCAATATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCGGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATCTATATATCTTGTGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACGAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTGAAGCTGAAGGACTGGCAGAGAACTAAAATTGAAATGATGCAAAAAGCTTATAAGGAATCTGAGGTGAAAGAATCTCATGGAGATCCACAAATATGTTCTAGGGGGAGTTCACCTGATCCATCGCTTAGTACAAAAAATAATGAACTGGATTTGGAATCAAACCAGAATAATTTGACTATGGATCAAGGGTTTGAAATTTATTCTAGTGCCGAAGAGAATATGGACAATTGTGAACTTCCATTCAGACAAAATGGAGATATCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGACGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTTGGGAAGTCAGATGATATAGTAAATGAATTTGTCACGATGCCTCTGTATGATGGAGCCATTTTTCTTGACAGACATCATAAAAGAAAGTTGAAAGAAGAATTTGGAGTGGAGCCGTGGTCTTTTGAACAGAATCTTGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGTTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGGGAGGCTGTAAGAATGGCTGAAGAAGTCCGCTGTCTACCTAATGAACATGAAGCAAAGCTTCAAGTATTGGAGGTAGGGAAGATATCTCTCTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGTGCAGAGATTGGATGTGGAGACCCTAATTTGACTGCGATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTAGTTGTGCTTGA 2823 0.4166 MDQARSTSGNNGEENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLSLGESDIYLESKSDDFDTPLSTINNNNNNNHSSSSGKKFLDKVSKNQYRYTPDNDTRRGSSTRRAPKLDDDSPERVDVDVPLYEENWVSYDSPPEDSVRKRSHRSLEANATTEYTDGTSDSSQETGGQTCHQCRRNDRDRVTWCLRCDRRGYCDSCISTWYSDISLDEIQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLNCCRDLREATVSHSDEPQTEQAKTSDRNLLYKFPRWKSNDNGSIPCPPKEYGGCDNSSLNLSRIFKMNWVAKLVKNVEEMVSGCRINNTDGPRETGLIALRLCQYSQREASDDNYLYCPTSEDLKTHGIANFRKHWKTGEPIIVKQVFDRSSISSWDPMVIWRGIRETTDEKIKDENRMVKAIDCLDGSEIDIELGQFIKGYSEGRFHENGWPQILKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISCGISDELGRGDSVTNLHFNMRDMVYLLVHTSEVKLKDWQRTKIEMMQKAYKESEVKESHGDPQICSRGSSPDPSLSTKNNELDLESNQNNLTMDQGFEIYSSAEENMDNCELPFRQNGDISEKTHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVNEFVTMPLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRMAEEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGCGDPNLTAMVSENYEKMVKRRQISCA* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01861 940 MobiDBLite consensus disorder prediction 88 128 - -
Rops6g01861 940 MobiDBLite consensus disorder prediction 1 22 - -
Rops6g01861 940 Gene3D Cupin 465 879 - -
Rops6g01861 940 MobiDBLite consensus disorder prediction 86 204 - -
Rops6g01861 940 SUPERFAMILY Clavaminate synthase-like 483 877 - -
Rops6g01861 940 Pfam WRC 19 59 IPR014977 -
Rops6g01861 940 MobiDBLite consensus disorder prediction 681 716 - -
Rops6g01861 940 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 198 263 IPR018866 -
Rops6g01861 940 MobiDBLite consensus disorder prediction 181 203 - -
Rops6g01861 940 Pfam JmjC domain, hydroxylase 756 849 IPR003347 -
Rops6g01861 940 ProSiteProfiles Zinc finger RING-type profile. 203 250 IPR001841 -
Rops6g01861 940 MobiDBLite consensus disorder prediction 692 716 - -
Rops6g01861 940 ProSiteProfiles JmjC domain profile. 576 870 IPR003347 -
Rops6g01861 940 MobiDBLite consensus disorder prediction 129 154 - -
Rops6g01861 940 ProSiteProfiles WRC domain profile. 18 62 IPR014977 -
Rops6g01861 940 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 20 904 IPR045109 GO:0032454|GO:0033169
Rops6g01861 940 SMART cupin_9 583 870 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01861 Rops-Chr6 36436811 36449636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01861 19 59 GRF Transcription Factor Family AT3G13960 46.341 3.06e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops6g01861 JmjC 1.5e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01861 K15601 - gmx:100801287 1583.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01861 6 36436811 36449636 Rops6g01861 6 36436811 36449636 ECH