Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01859 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCAGGAGAGAATACCAGAGAAGATGTAGTTAAACAGCAACCAAATATACTGGGTCAGTTCCATAGTCCACATTCTCTTACTTCAACAACAACAACTAATAATAGCAATGGTTCCAACACAAATTTACAACCACCTGCACCTGTTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTTTATCACCAACCACACTCATGGCCACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAATTGCACCGACGAGGCCACAACTTGCCATGGAAACTTAAGCAGAGAACAAGCACAGAAGTTAGAAAGCGGGTTTATGTTTGTCCAGAACCTTCATGTGTCCACCACAACCCAGCAAGAGCACTAGGTGATCTCACTGGCATTAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAATGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCACATTCGAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACCCATAGAGCTTTCTGTGATGCACTAGCTGAGGAGAACAACAAAGCCAATGAAGGACAATTGTCAAAGATGGGTTCAAACTTACCAATCCCAAACCTCGTTTCCTCTTTACCGATCAATACAAATACCAACGCCAATCCCAACCCACAAATTGGAGGGACGTCACTGCCTCACGAGCTCATGCCAGTGCCTACAAAACCCTTCAACAACATTGCCGGAACAGTGTTCACTAGAAGCCTTTCATCCAACTCTTCTCCCTCTCTTCAACTGAGTTCAAATTCACTCAACATCTTCGAGGAAAACGGGCTCCATTTAGCTGCGGGGTCACCCCACATGTCGGCCACTGCATTGCTGCAAAAAGCTGCACAAATGGGTGCAACAGTGAGTAATAGCAGCAGCACGAACATGGCACCACCATCATTTGGTGTGGTGCAACAACCACCCTTCATGAACCAGTACATGCAGAACGGGCAACAGTACAATTTCAATGCAAATGGGATGGGTGGTGGAATGAATGGGATGGATATGTTCAACGCTATATTGGATCAAAGTAAGGCATTGTCGAAGATCATAGAGCAGAACAGTCAAAGCAATAGTGGAGGACCAACAAGTAGTGTTATTAACATGGGTGCAAGTAAAGGAAGTGGGGATGTACTGACTCTGGACTTGTTGGGAATAGGAGGAGGAGGAGGAGGAGGTGGTGGGCATGGAAATTTCTATGGGGGTACTCAACAGGCAGAAAGTGGTGCAGCAGATGAGGTTTGGAGAAATTGGTCTACCAAGAACGCAGGGTTTGAATCCTTTTCAGCAACAAGCAACACTTGA 1449 0.4465 MSNITSCDSGSFSGENTREDVVKQQPNILGQFHSPHSLTSTTTTNNSNGSNTNLQPPAPVKKKRSLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLSKMGSNLPIPNLVSSLPINTNTNANPNPQIGGTSLPHELMPVPTKPFNNIAGTVFTRSLSSNSSPSLQLSSNSLNIFEENGLHLAAGSPHMSATALLQKAAQMGATVSNSSSTNMAPPSFGVVQQPPFMNQYMQNGQQYNFNANGMGGGMNGMDMFNAILDQSKALSKIIEQNSQSNSGGPTSSVINMGASKGSGDVLTLDLLGIGGGGGGGGGHGNFYGGTQQAESGAADEVWRNWSTKNAGFESFSATSNT* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01859 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Rops6g01859 482 MobiDBLite consensus disorder prediction 1 58 - -
Rops6g01859 482 MobiDBLite consensus disorder prediction 1 74 - -
Rops6g01859 482 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Rops6g01859 482 SMART c2h2final6 166 186 IPR013087 -
Rops6g01859 482 SMART c2h2final6 131 161 IPR013087 -
Rops6g01859 482 SMART c2h2final6 90 112 IPR013087 -
Rops6g01859 482 Gene3D Classic Zinc Finger 69 136 - -
Rops6g01859 482 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Rops6g01859 482 FunFam protein indeterminate-domain 12-like 69 137 - -
Rops6g01859 482 Gene3D Classic Zinc Finger 145 225 - -
Rops6g01859 482 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Rops6g01859 482 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 451 IPR031140 -
Rops6g01859 482 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01859 Rops-Chr6 36427747 36431942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01859 47 340 IDZ Gene Family AT3G50700 55.988 9.54e-116 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g01859 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01859 - - gmx:100785295 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03978 8 81064690 81068557 Rops6g01859 6 36427747 36431942 ECH
Rops6g01859 6 36427747 36431942 Rops6g01859 6 36427747 36431942 ECH
Rops8g03040 8 67519871 67523805 Rops6g01859 6 36427747 36431942 PCT
Rops8g03978 8 81064690 81068557 Rops6g01859 6 36427747 36431942 PCT