Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01858 ATGGAAGAGGAGCAAGATAGATCGTTGCCCATTGCAAATGTTGGTAGAATCATGAGGCAAATTCTTCCTCCTAGTGCAAAGATCTCCAAAGAAGGGAAACAACAAATGCAAGAGTGTGTTACAGAGTTCATAAGTTTTGTGACAGGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGGCCATTGGACGGTACTTGCATAAATACAGGCTAGCTGAAAGGGAGAAAATCAATCAGAACAAACTTGATAGCGCCAAAGAAAAGTATGACGGAGCAGCCACAACAAGAAGCAGCCAACTTGAGAAGCAAACTCAAATCCTCGCTCCTCTACAGTGTAGGGTTACTGAAAAGGTTGAAAGCTCTCCTGCAAATCAATCTGGATGA 450 0.4378 MEEEQDRSLPIANVGRIMRQILPPSAKISKEGKQQMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIGRYLHKYRLAEREKINQNKLDSAKEKYDGAATTRSSQLEKQTQILAPLQCRVTEKVESSPANQSG* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01858 149 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Rops6g01858 149 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Rops6g01858 149 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Rops6g01858 149 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops6g01858 149 FunFam Nuclear transcription factor Y subunit B-6 1 113 - -
Rops6g01858 149 SUPERFAMILY Histone-fold 5 136 IPR009072 GO:0046982
Rops6g01858 149 Gene3D Histone, subunit A 1 146 IPR009072 GO:0046982
Rops6g01858 149 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops6g01858 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 72 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01858 Rops-Chr6 36383638 36384087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01858 4 145 CCAAT-HAP3 Transcription Factor Family AT1G09030 62.500 2.40e-57 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops6g01858 CBFD_NFYB_HMF 1.3e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01858 K08065 - csin:114264413 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01858 6 36383638 36384087 Rops6g01858 6 36383638 36384087 ECH