Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01854 ATGGGGGAAAACTGGAATAAGGAGGCTGAAGGAACTTGCACTGATCTTAGCCTCCATATACATAAAGGATCAATGGCGCCGACAAGGAAATCTAGAAGTGTGAATAAGCGGTTTTCAAATTCAAATGACCTTTCTCCTGAGAAAGATGGAGTTAACTCAAATAAAAGCAAGCAACGGAAGAAAAAGTTGTCTGATAAATTGGGATCTCAATGGAGCAAGGAAGAACTAGAACGATTTTATGAAGCATACAGGAAGTACGGGAAAGACTGGAAGAAGGTGACTGCTGTTGTACGTAATAGATCTGTTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCCTACCTATCCCTGCCAGAGGGGACAGCTTCTGTTGTTGGCCTCATTGCAATGATGACAGATCATTATAATGTGCTGGAAGGGAGTGATAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAAGTTCAGCTTAGTGTCTCAAAAGATCCTGTCCAGTCTCACTCAGTTGCTTCTGCTGATGGTTGCCTCTCTCTACTGAAGAAAAGACGCTTTGATGGTATCCAGCCTCGTGCTGTTGGGAAAAGAACACCTCGTGTCCCAGTTTCGCACTCTTACAAGAAAGATGATATGGAAAATTATATTTCACCCAATAAAAGAAGCCTGAAGTCAGCTGTTGATGGTAATGATGATGAAGTTGCGCATGTAGCTTTGGCATTAACCAAGGCTGCACAAAGTGGGGGCTCTCCCCTAGTTTCCCAAACACCATATAGAAGGGCAAAACAGAAGTCTTCTCGTGTTCAGAGTGGGGAAAAAATGCACCAAATGTCAGAGACAGCTCGTGCCAAGTTTCATGATGTTTCTATGGATGAAGAGTTTTTGGAAGGCAGTATAGAAAGCAGGGGAGCTGAAAATGGAGAATATGCCAGAGATACTAGTTCCTTGATGGATATGGAAGGCATGGGCACTGTTGAAGTTCTTCAGAAGGGGGGGAAAATTTACAGAAAGAAAGAGAGAGTGGAAAATGTTGGAAACCATCTGCTGGGTGATGGTGGAGAAGCATGCAGTGGCACTGAAGAAGGACGTTGTTATAGTTCTTTGAAGGAAAAGGTTGGTAATGAGGTTACTAATGAAAAACTTGAGCAATTCTCTCTAAAAGGTCAGAGGAAAAGAAGCAAGAAACTCTTCTGTGGAGATGAAATCCCTGCATTGAATGCTTTGCAAACTTTGGCTGATCTGTCTCTAATGATGCCAACATCTACAGTAGAATCTGAATCATCTGTCCAGTTGAAGGGAGAAAGAATGACTGTTGATAAAGATGATAAGTGTGCTTTACCTGAAGCAACATCAGCAAGTCAAAACAATTATAAACTTAAATGTGTGGTCCCTGGAGTTGAGGTCTCAACCTCCAAAAAATCTAAACTCAGAAAGGAATCAGCAAATGATACTAATGCTCTCTCTGAATCAAAAGAGCAGCTTCTCATTGTTGATAGAACATGGAAAAGAAAGAAAAGTTCTGTGGTTTCAAAGGTTGGAAATGCAAAGGTTGATTCTTATCCAAGTGATTCCTTGAATAATGAAGCTGTAGATGATGAGAACAAACCAGTAATTAAAGGAAAACACACTGATCAGGTTTTTACCCTACCAAAACAATTGAAGACGGTCAAATCATCAGAGAGCTTCCTGGGTGGAAATCAGAAAGATTTGACTGAAGTTAGCTTACCAACTAAACAAAGAAGTAGACGGAAGATGATTTTACAGAGAACATCCATGCCTAAAGAGAAGTCTTTTGAAAACATATTGAAAAGTCAACCTAATATGAACTTTACCCTGAAGGAAAAGCTTTCTAGTTGCTTGTCATCTCATATGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCAATTGATTGTCCATGGTTTGCCAAAAGGGAATTCATGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAATGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACACTTTCTATGTGAAGAAAGACAAAAACTTGAACAGTATCGTGAATCAGTGAGGAAACATTATGCTGAACTACAGACTGGTATTAGAGATGGACTTCCAACAGATTTAGCTAGACCATTATATGTTGGACAACGAGTAATTGCTCTTCATCCAAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACAGTTGACCATGACAAGTGCAGGATTCAGTTTGACCGTCCTGAATTAGGCGTTGAATTCATCATGGATATTGATTGCATGCCTTTGAATCCATTAGAAAATATGCCAGAAGCTCTAAGGAGGGAGTTTGGAGCCAGAAATGCCTCTTTTATGACTAAAGAACTACAGATCGATGGAAATTCAAGTTTTGGAGGATTCGAAATGCGTGCTTCACCTGTTAAGGGGGATATGAGTCATGTCGTTGCCCAGGCTAAGGTTGCTACCATTGGTAATCTCTGTGCACAAGCAGCTTGTGCTCAACCATGTAAAGTGAGACACCATCAAGCTAAGGAAGCTGATATACATGCACTTACTGAACTAAAACGTGCTCTAGATAAAAAGGAAACGCTGTTAATGGAGCTTCGAAATGCTAATAATGACATAATGGAAAACCAAAATGGTGTAGAATGTTTAAAAGATTCTGAGGCTTTCAGGAAGCATTATGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATGCCATGCTTCAATTGAGGCAACGCAATACTTACACAGGAAACTCTCTGCCACCATGGATGAAGCCCCAAGCAAGTTTATATATTCATGATGACCCTCCCAGTGTGTTGGATAGTTCTCTAGCACAAGAGTCAGGGTCAACTGTCATAGAAATTATTAAAGGATCCAGGTTAAGGGCACATGCAATGGTGGATGCTGCATTTCAGGCATTGTCTTTGACGAGGGAAGGTGAAGATGCTTTCACCAGGATTGGGCAGGCGTTGGATTCTATCGATTATCAACGGTTGGCCTCCAAGTCTAGGTTACCTGTGATCAGATCCCAAGATCAAGTGAATGGCAGTTCTTATTATCGTAATCGGTCAACTTGCGGTGCATCAGAGTCTTTACTTAATGATGCATCTGGTCCTAAACCGCATAATGATTCTGACAAAGTTGATACTGAAATTCCATCAGAGCTTATCACTTCATGTGTTGCTTCGTTAATCATGATCCAGACTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTGGATTCTGCCGTTACCAGCCTGCATCCATGCTGTCCTCGAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAGACCCAGATTCTTGCTCTCGTCCGTACCTAA 3447 0.4128 MGENWNKEAEGTCTDLSLHIHKGSMAPTRKSRSVNKRFSNSNDLSPEKDGVNSNKSKQRKKKLSDKLGSQWSKEELERFYEAYRKYGKDWKKVTAVVRNRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEGSDSERESNDAPGSRKPVKRKREKVQLSVSKDPVQSHSVASADGCLSLLKKRRFDGIQPRAVGKRTPRVPVSHSYKKDDMENYISPNKRSLKSAVDGNDDEVAHVALALTKAAQSGGSPLVSQTPYRRAKQKSSRVQSGEKMHQMSETARAKFHDVSMDEEFLEGSIESRGAENGEYARDTSSLMDMEGMGTVEVLQKGGKIYRKKERVENVGNHLLGDGGEACSGTEEGRCYSSLKEKVGNEVTNEKLEQFSLKGQRKRSKKLFCGDEIPALNALQTLADLSLMMPTSTVESESSVQLKGERMTVDKDDKCALPEATSASQNNYKLKCVVPGVEVSTSKKSKLRKESANDTNALSESKEQLLIVDRTWKRKKSSVVSKVGNAKVDSYPSDSLNNEAVDDENKPVIKGKHTDQVFTLPKQLKTVKSSESFLGGNQKDLTEVSLPTKQRSRRKMILQRTSMPKEKSFENILKSQPNMNFTLKEKLSSCLSSHMVRRWFTFEWFYSAIDCPWFAKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLCEERQKLEQYRESVRKHYAELQTGIRDGLPTDLARPLYVGQRVIALHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPLNPLENMPEALRREFGARNASFMTKELQIDGNSSFGGFEMRASPVKGDMSHVVAQAKVATIGNLCAQAACAQPCKVRHHQAKEADIHALTELKRALDKKETLLMELRNANNDIMENQNGVECLKDSEAFRKHYATVLVELKEASGQVSDAMLQLRQRNTYTGNSLPPWMKPQASLYIHDDPPSVLDSSLAQESGSTVIEIIKGSRLRAHAMVDAAFQALSLTREGEDAFTRIGQALDSIDYQRLASKSRLPVIRSQDQVNGSSYYRNRSTCGASESLLNDASGPKPHNDSDKVDTEIPSELITSCVASLIMIQTCTERQYPPADVAQILDSAVTSLHPCCPRNLPIYREIQMCMGRIKTQILALVRT* 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01854 1148 FunFam Protein ALWAYS EARLY 3 isoform A 27 123 - -
Rops6g01854 1148 PANTHER LIN-9 25 1148 IPR010561 GO:0006351|GO:0017053
Rops6g01854 1148 SMART sant 67 115 IPR001005 -
Rops6g01854 1148 MobiDBLite consensus disorder prediction 50 67 - -
Rops6g01854 1148 Pfam Myb-like DNA-binding domain 69 106 IPR001005 -
Rops6g01854 1148 MobiDBLite consensus disorder prediction 1056 1075 - -
Rops6g01854 1148 MobiDBLite consensus disorder prediction 140 168 - -
Rops6g01854 1148 Gene3D - 12 123 - -
Rops6g01854 1148 SUPERFAMILY Homeodomain-like 66 114 IPR009057 -
Rops6g01854 1148 MobiDBLite consensus disorder prediction 140 176 - -
Rops6g01854 1148 MobiDBLite consensus disorder prediction 256 282 - -
Rops6g01854 1148 Coils Coil 870 897 - -
Rops6g01854 1148 Pfam DIRP 641 742 IPR033471 -
Rops6g01854 1148 CDD SANT 71 112 IPR001005 -
Rops6g01854 1148 ProSiteProfiles SANT domain profile. 66 103 IPR017884 -
Rops6g01854 1148 MobiDBLite consensus disorder prediction 28 49 - -
Rops6g01854 1148 SMART DIRP_2 642 743 IPR033471 -
Rops6g01854 1148 MobiDBLite consensus disorder prediction 16 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01854 Rops-Chr6 36324086 36339176 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops6g01854 DIRP 3.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01854 - - gmx:100816217 1727.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01854 6 36324086 36339176 Rops6g01854 6 36324086 36339176 ECH
Rops8g03990 8 81262097 81269928 Rops6g01854 6 36324086 36339176 PCT