Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01850 ATGAACGATCAAATTCAAATGCTCGCTGAGAAGTTTCACCGCTTCGTTCTTGATTGCGAACTCAAGCAATCCTCAATCGCTCACCGCTCAGATAATATATCGAAACAAGTGAACAACAACTCTGACTCCATGGATGAAAACAGTTTGACCAATGGAATCCATGAAATTTCTCCGGATCAGGGTCACACACTTCCTATTTTAAAGAAAATCCTTGATCTGAGTGACAAAATTCAGGATTTGAAGAAGCAGCACGTGGCCTTATCTGATGAAGTGAAACCCACAACTGAATCATTTCCGGGTCTTGATGTTCTGAACTCTCTTCAGCTTCTCGGTACTGAATATGAACTACTGAAAAGAAAGTACCTGAAGGAATCCTCTGAGCGAAGGCAGCTTTACAATGAAGTTATTGAACTCAAGGGAAATATTAGGGTTTTCTGCAGATGCAGACCGTTGAATGATAGTGAAATTGAAAATGGGTCTGCATCAGTTGTCAGTTTTGAATCATCTTCTGATAATGAGCTTCAAGTAATTTGCTCAGATTCATCCAAGAAGCAATTTAAATTCGATTATGTATTTGGGCCCGAAGATAACCAAGAGGCTGTTTTTGCACAAACTAAACCTATTGTTACATCAGTATTGGATGGGTTTAATGTCTGCATATTTGCCTATGGGCAAACTGGAACTGGTAAAACATTTACAATGGAGGGAACACCAGAACACAGGGGAGTTAACTACAGAACCCTGGAGGAATTATTTCGGATAACTGAAGAGAGAAAAGGCGTGATGAAGTATGAATTGCATGTTAGCATGTTGGAGGTTTACAATGAGAAGATAAGAGATCTCTTGGTAGAAAATTCGACCCAACCTGCTAAGAAATTGGAAATAAAGCAAGCTGCAGAAGGAACCCAAGAAGTCCCAGGACTTGTTGAAGCTCGTGTCTATGGAACAGAAGATGTGTGGGAATTGCTTAAGACTGGAAATCGAGTCAGATCTGTTGGATCCACCTGTGCTAATGAGCTTAGCAGCCGTTCTCATTGCTTGTTGCGAGTAACTGTTATTGGGGAAAATTTAATCAATGGCCAGAAAACAAAGAGTCACCTTTGGCTAGTAGATTTAGCTGGTAGTGAGCGTGTGGGAAAAACTGAAGCTGAAGGAGAAAGACTGAAGGAATCTCAATTCATAAATAAGTCTCTTTCAGCACTCGGTGATGTTATTGCTGCCCTTGCTTCCAAATCAGCTCACATCCCTTACAGGAACTCAAAGCTCACTCATATACTGCAGAGCTCTTTAGGAGGAGACTGCAAAACGTTAATGTTTGTCCAGGTAAGTCCAAGCGCAGCAGACTTAGGAGAGACACTTTGTTCACTGAATTTTGCCACCCGAGTCCGAGGAATCGAGAGTGGCCCAGCTCGCAAGCAAGTAGACCTCTCTGAGTTGTTTAAGTACAAACAAATGGTAGAAAAGCTCAAACATGACGAGAAGGAAACTAAGAAATTACAGGAAAACTTGCAAACCTTGCAACTCAGACTTGCGGCAAGAGAACACCATTGTAGACACCTTCAGGAAAAGGTTCGGGACCTTGAGAACCAGATAGCAGAAGAAAGAAAAGCCAGACTAAAGCAAGAAAATAGATCACTTGCTGCTGTTTCAACTCAAACTTCATCACTAAAACACACTACAGCTAATAAAACCATGACAGATAAGAAGCCACCACTGAATCCTTCAAAACTGAGACTGCCACTTAGAAGAATAACTAATTTCTTGCCTCCACCGTCTCCTCAAACATCAAAGAGATATACCCCATTCATGAATGGAAAGGAAAACTCTGCCAGAAGGACCCCAAGAAGCAGGGCATCCATTGCCGTGAGACCACCATCTATACCATCAACAACACAGATCCTTCAGCCAAGAAGGCGGGTCTCCATTGCTACACTCCGTCCTGCCACAACTTCTGACATAACAACTCCACTCCGTACCATACCATCAACAACACAGATCCTTCAACCAAGGAGGCGGATCTCCATTGCTACACTCCGTCCTGCCACAACTTCTGACATAACAACTCCACTCCATACCTCAGCCTCCCGATTCACCGGTGGAAGCAGTGTATCACTTATGAGGAGTCAAAGGAAAAGTCGGTATTCAAGTTTGTTCGCCCCATTACCTGAGTCGAGAGCATCAGTTGAGACAACACCAATTGCTGTTAGGAGCAGCAGCAAGTTTATGAGCAGTCCAGCAAATGTAGATTCACGGTTGGGTAGGCATCCAACTGTCCTTTCACTGCAAAGGAAACCTTTAGTCTGGAGTCCTCTCAAGCTTAGAGGCTTGAAAAATAACCGAAAGTCATCATTCTTGCCATCTCAAATGCAATAG 2373 0.4286 MNDQIQMLAEKFHRFVLDCELKQSSIAHRSDNISKQVNNNSDSMDENSLTNGIHEISPDQGHTLPILKKILDLSDKIQDLKKQHVALSDEVKPTTESFPGLDVLNSLQLLGTEYELLKRKYLKESSERRQLYNEVIELKGNIRVFCRCRPLNDSEIENGSASVVSFESSSDNELQVICSDSSKKQFKFDYVFGPEDNQEAVFAQTKPIVTSVLDGFNVCIFAYGQTGTGKTFTMEGTPEHRGVNYRTLEELFRITEERKGVMKYELHVSMLEVYNEKIRDLLVENSTQPAKKLEIKQAAEGTQEVPGLVEARVYGTEDVWELLKTGNRVRSVGSTCANELSSRSHCLLRVTVIGENLINGQKTKSHLWLVDLAGSERVGKTEAEGERLKESQFINKSLSALGDVIAALASKSAHIPYRNSKLTHILQSSLGGDCKTLMFVQVSPSAADLGETLCSLNFATRVRGIESGPARKQVDLSELFKYKQMVEKLKHDEKETKKLQENLQTLQLRLAAREHHCRHLQEKVRDLENQIAEERKARLKQENRSLAAVSTQTSSLKHTTANKTMTDKKPPLNPSKLRLPLRRITNFLPPPSPQTSKRYTPFMNGKENSARRTPRSRASIAVRPPSIPSTTQILQPRRRVSIATLRPATTSDITTPLRTIPSTTQILQPRRRISIATLRPATTSDITTPLHTSASRFTGGSSVSLMRSQRKSRYSSLFAPLPESRASVETTPIAVRSSSKFMSSPANVDSRLGRHPTVLSLQRKPLVWSPLKLRGLKNNRKSSFLPSQMQ* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01850 790 ProSiteProfiles Kinesin motor domain profile. 141 465 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops6g01850 790 MobiDBLite consensus disorder prediction 588 609 - -
Rops6g01850 790 CDD KISc_C_terminal 139 466 - -
Rops6g01850 790 Gene3D Kinesin motor domain 136 507 IPR036961 -
Rops6g01850 790 Coils Coil 482 549 - -
Rops6g01850 790 MobiDBLite consensus disorder prediction 544 569 - -
Rops6g01850 790 FunFam Kinesin-like protein 136 505 - -
Rops6g01850 790 ProSitePatterns Kinesin motor domain signature. 365 376 IPR019821 GO:0003777|GO:0005524|GO:0007018
Rops6g01850 790 PANTHER KINESIN-LIKE PROTEIN KLP-3 25 607 IPR027640 GO:0003777|GO:0007018
Rops6g01850 790 SMART kinesin_4 139 473 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops6g01850 790 PRINTS Kinesin heavy chain signature 335 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops6g01850 790 PRINTS Kinesin heavy chain signature 215 236 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops6g01850 790 PRINTS Kinesin heavy chain signature 415 436 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops6g01850 790 PRINTS Kinesin heavy chain signature 366 384 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops6g01850 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 501 IPR027417 -
Rops6g01850 790 Coils Coil 70 90 - -
Rops6g01850 790 MobiDBLite consensus disorder prediction 542 618 - -
Rops6g01850 790 Pfam Kinesin motor domain 147 465 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01850 Rops-Chr6 36289764 36293695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01850 107 501 Calmodulin-binding Proteins AT5G65930 40.640 7.55e-78 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01850 K10406 - gmx:100788477 1236.48