Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01832 ATGGATCATCAAGGGCATGTCCAGAACCAGAACCAGAACCAGAACCAAACTATGGGGGTTGTTGGTAGTGGACAACAAATGACGTATGGTTCTAATCCATATCAGCCAAACCATATAACTGGGTCACCTGGTATGGTTGTTTCATCTGTTGGGACTATTCAATCCACTGGTCAACAAGCTGGAACTCAGTTAGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACAGCTCCAAGCCTTTTGGGCTAATCAATATCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCAGTGGTTTTTGCAAGGGCATGTGAAATGTTCATATTGGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAGAACAAGAGGAGAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTCGAGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGCTGATCCACTTCCTTATTGCTATATGCCACCCCAACATGCTCAGCAAGTTGGAACTGCTGGTGTTATGATGCCTAAGCCTGTGATGGACCCAAATATATATGCTCCGCAGTCTCATCCTTACATGGCATCACAAATGTGGCCACAACCACCAGAGCAACAACAATCATCTCCAGATCAGTAG 804 0.4391 MDHQGHVQNQNQNQNQTMGVVGSGQQMTYGSNPYQPNHITGSPGMVVSSVGTIQSTGQQAGTQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPAADPLPYCYMPPQHAQQVGTAGVMMPKPVMDPNIYAPQSHPYMASQMWPQPPEQQQSSPDQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01832 267 SUPERFAMILY Histone-fold 73 179 IPR009072 GO:0046982
Rops6g01832 267 MobiDBLite consensus disorder prediction 246 267 - -
Rops6g01832 267 MobiDBLite consensus disorder prediction 1 33 - -
Rops6g01832 267 FunFam Nuclear transcription factor Y subunit gamma 72 185 - -
Rops6g01832 267 Gene3D Histone, subunit A 69 185 IPR009072 GO:0046982
Rops6g01832 267 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 63 219 - -
Rops6g01832 267 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 107 170 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01832 Rops-Chr6 36083471 36084274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01832 22 254 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.675 1.98e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops6g01832 CBFD_NFYB_HMF 4.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01832 K08066 - gmx:100527803 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01832 6 36083471 36084274 Rops6g01832 6 36083471 36084274 ECH
Rops8g04007 8 81488293 81491001 Rops6g01832 6 36083471 36084274 ECH
Rops8g04007 8 81488293 81491001 Rops6g01832 6 36083471 36084274 PCT